Locus 4888

Sequence ID 2L_DroMel_CAF1
Location 13,955,646 – 13,955,738
Length 92
Max. P 0.565645
window7750

overview

Window 0

Location 13,955,646 – 13,955,738
Length 92
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 82.68
Mean single sequence MFE -8.77
Consensus MFE -6.24
Energy contribution -6.93
Covariance contribution 0.70
Combinations/Pair 1.07
Mean z-score -1.55
Structure conservation index 0.71
SVM decision value 0.06
SVM RNA-class probability 0.565645
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13955646 92 + 22407834
ACUUA---AUACUUCCGCUU-AUUCAAGUCGCACCUAUAACUAAGUUGAACUUGAAUCAAUGCCAAAAAAUACACACACACAAUUCUAAAAUUAAA----
.....---........((..-((((((((..((.((.......)).)).))))))))....)).................................---- (  -8.50)
>DroGri_CAF1 48663 86 + 1
AAAUAUUUUCAUUUCCGCU-AACUCAAGUUGU--UAAUAGUCAAUUUGAACUUGAUUCAAUGCCAACU-----------GCAAUUCUAAAUAGAACUUUA
.......(((.........-...((((((((.--.......))))))))...........(((.....-----------)))..........)))..... (  -8.80)
>DroSec_CAF1 43488 92 + 1
ACUUA---AUACUUCCGCUU-AUUCAAGUCGCACCUAUAACUAAGUUGAACUUGAAUCAAUGCCAAAAAAUACACACACACAAUUCUAAAAUUAAA----
.....---........((..-((((((((..((.((.......)).)).))))))))....)).................................---- (  -8.50)
>DroSim_CAF1 43663 92 + 1
ACUUA---AUACUUCCGCUU-AUUCAAGUCGCACCUAUAACUAAGUUGAACUUGAAUCAAUGCCAAAAAAUACACACACACAAUUCUAAAAAUAAA----
.....---........((..-((((((((..((.((.......)).)).))))))))....)).................................---- (  -8.50)
>DroEre_CAF1 44527 92 + 1
ACUUA---AUACUUCCGCUU-AUUCAAGUCGCACCUAUAACUAAGUUGAACUUGAAUCAAUGCCAAAAAAUACACACACACAAUUCUAAAAUUAAA----
.....---........((..-((((((((..((.((.......)).)).))))))))....)).................................---- (  -8.50)
>DroAna_CAF1 42623 92 + 1
ACUUA---CCACUUCCGCUU-UUUCAAGUUGCACCUAUAACCGAGUUGAACUUGAAUCAAUGCCAAAAAAUACACACACACAAUUCUAAAAUUAAA----
.....---........((..-.((((((((.((.((.......)).)))))))))).....)).................................---- (  -9.80)
>consensus
ACUUA___AUACUUCCGCUU_AUUCAAGUCGCACCUAUAACUAAGUUGAACUUGAAUCAAUGCCAAAAAAUACACACACACAAUUCUAAAAUUAAA____
................((...((((((((..((.((.......)).)).))))))))....))..................................... ( -6.24 =  -6.93 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:11 2006