Locus 4886

Sequence ID 2L_DroMel_CAF1
Location 13,949,825 – 13,949,926
Length 101
Max. P 0.995182
window7747

overview

Window 7

Location 13,949,825 – 13,949,926
Length 101
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 88.49
Mean single sequence MFE -31.28
Consensus MFE -30.21
Energy contribution -30.40
Covariance contribution 0.19
Combinations/Pair 1.24
Mean z-score -2.44
Structure conservation index 0.97
SVM decision value 2.55
SVM RNA-class probability 0.995182
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13949825 101 - 22407834
UUCUU-UUGUGGCCAAGGGCGUCGUUCAAAAGGCAAAUCUGGUUUUGCCUCUUACGUAUCUCGGUUAGUCUUGAUUGGAUGCGUUAUCUAAUGGUCACAUUU
.....-.((((((((..((...........(((((((......)))))))...(((((((.((((((....)))))))))))))...))..))))))))... ( -31.40)
>DroSec_CAF1 37626 102 - 1
UUCUUUUUGUGGCCAAGGGCGUCGUUCAAAAGGCAAAUCAGGUUUGGCCUUUUACGUAUUUCGGUUAAUCUUGAUUGGAUGCGUUAUCUAAUGGUCACAUUU
.......((((((((((.((((((((.....))).(((((((.((((((.............)))))).))))))).))))).))......))))))))... ( -29.12)
>DroEre_CAF1 38795 100 - 1
UUCUU--UGUGACCAAGGGCGUCGGUAAAAAGGCCAAACAGGUUUGGCCUUUCGCGCAUCUCAGUUAGUCUUGAUUGGAUGCGUUAUCUAAUGUUCACAUUU
.....--.........((((((..(...((((((((((....)))))))))).(((((((.((((((....)))))))))))))...)..))))))...... ( -33.90)
>DroYak_CAF1 39188 100 - 1
UUCUU--UGGGGCCAAGGGCGUCGUUCAGAAGGCAAAUCAGGUUUGGCCUUUCGCGUAUCUCAGUUAGUGUUAAUUGGAUGCGUUAGCUAAUGGUCACAUUU
.....--((.(((((..(((........((((((.((......)).)))))).(((((((.((((((....)))))))))))))..)))..))))).))... ( -30.70)
>consensus
UUCUU__UGUGGCCAAGGGCGUCGUUCAAAAGGCAAAUCAGGUUUGGCCUUUCACGUAUCUCAGUUAGUCUUGAUUGGAUGCGUUAUCUAAUGGUCACAUUU
.......((((((((..((........((((((((((......))))))))))(((((((.((((((....)))))))))))))...))..))))))))... (-30.21 = -30.40 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:08 2006