| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,914,875 – 13,914,986 |
| Length | 111 |
| Max. P | 0.527338 |
| Location | 13,914,875 – 13,914,986 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 87.07 |
| Mean single sequence MFE | -32.33 |
| Consensus MFE | -25.89 |
| Energy contribution | -26.08 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13914875 111 + 22407834 CUGUGAUCGUGUGCGCUAAAUUCACUGCCAGUUACUGGCAAUUAAAUUAUUUAAUUGCUUGUGAAAGAGUUAAUAA-CUAAGCUGUCAACGGCGACCUUGGCAGUGUGGAAU ..(((........)))......(((((((((((((.(((((((((.....))))))))).))))............-....((((....))))....)))))))))...... ( -31.40) >DroSec_CAF1 2654 111 + 1 CUGUGAUCGUGUGGGCCAAAUACACUGCCAGUUACUGGCAAUUAAAUUAUUUAAUUGCUUGUGAAAGAGUUAAUAA-CUAAGCUGUCAACGGCGACCUUGGCAGUGUGGAAU ...((..(.....)..))..(((((((((((((((.(((((((((.....))))))))).))))............-....((((....))))....))))))))))).... ( -33.90) >DroSim_CAF1 3397 111 + 1 CUGUGAUCGUGUGCGCCAAAUACACUGCCAGUUACUGGCAAUUAAAUUAUUUAAUUGCUUGUGAAAGAGUUAAUAA-CUAAGCUGUCAACGGCGACCUUGGCAGUGUGGAAU ..(((........)))....(((((((((((((((.(((((((((.....))))))))).))))............-....((((....))))....))))))))))).... ( -34.10) >DroEre_CAF1 2713 111 + 1 UCGUGAGCGUGUGCGCCAAAUGUACCGCCAGUUACUGGCAAUUACACUAUUUAAUUGCUUGUGAAAGAGUUAAUAA-CUAAGCCGUCAACGGCGACCUUGGCAGUGUGGAAU ...((.(((....)))))....(((.(((((((((.((((((((.......)))))))).))))............-....((((....))))....))))).)))...... ( -29.90) >DroYak_CAF1 2748 111 + 1 GUGCGAUCGUGUGCGGCAAAUGUACUGCCAGUUACUGGCAAUUAAAUUAUUUAAUUGCUUGCGAAAGAGUUAAUAA-CUAAGCUGUCAACGGCGACCUUGGCAGUGUGGAAU ......((...(((((((.......)))).......(((((((((.....))))))))).)))...))........-(((.((((((((.(....).)))))))).)))... ( -30.90) >DroAna_CAF1 2645 106 + 1 ----CAUCUUGUGUGCUAAA-GUGGUCUCAGUACCUUGCAAUUAAGAUACUUAAUUGC-UGUGAAAGAGCUAACAAGCGUUGCUGUCAGCAGCGACCUUGGCAGUGUGGAAU ----(((.((((........-.(((.(((..(((...(((((((((...)))))))))-.)))...)))))).((((.(((((((....))))))))))))))).))).... ( -33.80) >consensus CUGUGAUCGUGUGCGCCAAAUGCACUGCCAGUUACUGGCAAUUAAAUUAUUUAAUUGCUUGUGAAAGAGUUAAUAA_CUAAGCUGUCAACGGCGACCUUGGCAGUGUGGAAU ...............(((....(((((((((((((.((((((((((...)))))))))).)))).................((((....))))....))))))))))))... (-25.89 = -26.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:02 2006