Locus 4881

Sequence ID	2L_DroMel_CAF1
Location	13,913,967 – 13,914,072
Length	105
Max. P	0.848155

overview

Window 9

Location	13,913,967 – 13,914,072
Length	105
Sequences	6
Columns	118
Reading direction	forward
Mean pairwise identity	68.24
Mean single sequence MFE	-29.34
Consensus MFE	-8.25
Energy contribution	-7.78
Covariance contribution	-0.46
Combinations/Pair	1.57
Mean z-score	-2.23
Structure conservation index	0.28
SVM decision value	0.78
SVM RNA-class probability	0.848155
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13913967 105 + 22407834
UAAUGCAAGUCGAGCUUAAUCGAUGCUCUAAGCUAAACAAAC--------GGCAAUGACGUUGUAUGGAUCUA---CUUAUGCUGGGUCAUUGAU--UUGUUUACAUUAAAUAAGUUA
(((((...(((((......)))))((.....))((((((((.--------..(((((((.(.((((((.....---.)))))).).))))))).)--))))))))))))......... ( -26.00)
>DroSec_CAF1 1768 112 + 1
UAAUGCAAGUCGAGCUUAAUCGAAGCUCUAAGCUAAACAAACAGUUUAACGGCAAUGACUUUGCAUGGGUCUA---CUUAUGCUGGGUCAUUGAU--UUGUUUAUAUUAAAUAAUUU-
....(((((((((((((.....))))))...(((((((.....))))...)))(((((((..(((((((....---)))))))..))))))))))--))))................- ( -34.50)
>DroSim_CAF1 2487 112 + 1
UAAUGCAAGUCGAGCUUAAUCGAAGCUCUAGGCUAAACAAACAGUUUAAUGGCAAUGACUUUGUAUGGGUCUA---CUUAUGCUGGGUCAUUGAU--UUGUUUAUAUUAAAUAAUUU-
....(((((((((((((.....))))))...(((((((.....)))...))))(((((((..(((((((....---)))))))..))))))))))--))))................- ( -32.40)
>DroEre_CAF1 1816 114 + 1
AAGUGCAAGUCGAGCUCAAUCUGAGCUCUAAGC-AAACAAAUAGUUUAACGACAUUAGCUUUGUAUCGUUCUACUACUAAUCGCGGGUCAUUGAU--UUGUAUACACAAAGUAGUU-A
..(((((((((((((((.....))))))...((-.......((((..(((((.((.......)).)))))..))))......))........)))--)))))).............-. ( -27.82)
>DroYak_CAF1 1824 114 + 1
UAAUGCAAGUCCGGCUUAGUCUAAGCUCUGAGCUAAACAAAAAGCUUAACGGCGAUUACUUUGUAUGGAUCUU---CUUAUGGUGGAUCAUUGAUAGUUUGAAAUACUAUAUUGAU-A
..((((((((..(((((((........)))))))..)).....(((....))).......))))))..(((..---..(((((((..(((.........)))..)))))))..)))-. ( -23.80)
>DroPer_CAF1 1644 102 + 1
UUGUGGAACGCAUGCGCAACAUCAGCGCCAGCUGCGGCGAAUAGCCGAUCAGCAACAAAUUUGCCUCGCUCUA---C-------GGGUCACUGAU--UUGCAUUCAG---GUGCUUU-
(((((.(.....).)))))....((((((.((((((((.....))))..))))..((((((((.((((.....---)-------))).))..)))--)))......)---)))))..- ( -31.50)
>consensus
UAAUGCAAGUCGAGCUUAAUCGAAGCUCUAAGCUAAACAAACAGUUUAACGGCAAUGACUUUGUAUGGAUCUA___CUUAUGCUGGGUCAUUGAU__UUGUAUACAUUAAAUAAUUU_
....((.....((((((.....))))))...))...((((...........((((.....))))...(((((............)))))........))))................. ( -8.25 =  -7.78 +  -0.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:01 2006