Locus 4880

Sequence ID 2L_DroMel_CAF1
Location 13,911,557 – 13,911,647
Length 90
Max. P 0.552698
window7738

overview

Window 8

Location 13,911,557 – 13,911,647
Length 90
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 79.27
Mean single sequence MFE -23.18
Consensus MFE -16.55
Energy contribution -16.88
Covariance contribution 0.33
Combinations/Pair 1.14
Mean z-score -1.08
Structure conservation index 0.71
SVM decision value 0.04
SVM RNA-class probability 0.552698
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13911557 90 + 22407834
GACUGCUCACCUACUUUCAACCUCUGCAAGACUGGUUGCAGCACCAGAAUCAAGAAAACAACCUGGAAGUGGGCUGGACAUAAGAUU--UGG------
...((..((((((((((((...((.....))(((((......)))))................)))))))))).))..)).......--...------ ( -21.20)
>DroPse_CAF1 69223 98 + 1
GGUUGUUGGCCUACUUCAAGCCCCUACACGAUUGGUUGGUGCAGCAGAAUCAGCUACAAAAUCUGGAUGUGGGUUGGGCAUAGAAUACAUAGUAUUAA
(((.....)))........((((...((((.(..(....((.(((.......))).))....)..).))))....))))....(((((...))))).. ( -21.10)
>DroSec_CAF1 55431 96 + 1
GACUGCUCACCUACUUUCAACCUCUGCAAGACUGGUUGCAACACCAGAAUCAAGAAAACAACCUGGAAGUGGGCUGGACAUAAGUUU--UAUUAUUUA
...((..((((((((((((...((.....))(((((......)))))................)))))))))).))..)).......--......... ( -21.20)
>DroSim_CAF1 57649 96 + 1
GACUGCUCACCUACUUUCAACCUCUGCAAGACUGGUUGCAACACCAGAAUCAAGAGAACAACCUGGAAGUGGGCUGGACAUAAGUUU--UAGUAUUUA
...((..((((((((((((..((((......(((((......))))).....)))).......)))))))))).))..)).......--......... ( -23.50)
>DroEre_CAF1 55422 84 + 1
GACUGCUCACCUACUUCCAACCUCUUCAAGACUGGUUGCAGCACCAGAAUCAGGAGAACAACCUGGAAGUGGGCUGGACAU--------------UUA
...((..((((((((((((...(((((....(((((......))))).....)))))......)))))))))).))..)).--------------... ( -27.20)
>DroYak_CAF1 57779 96 + 1
GACUGCUUGCCUACUUUCAACCUCUUCAUGACUGGCUGCAGCACCAGAAUCAAGAAAACAACCUGGAAGUGGGCUGGACAUAAAUUU--GAGCACUUA
...((((.(((((((((((.....(((.(((((((........))))..))).))).......)))))))))))....((......)--))))).... ( -24.90)
>consensus
GACUGCUCACCUACUUUCAACCUCUGCAAGACUGGUUGCAGCACCAGAAUCAAGAAAACAACCUGGAAGUGGGCUGGACAUAAGUUU__UAGUAUUUA
...((((..((((((((((...((.....))(((((......)))))................))))))))))..)).)).................. (-16.55 = -16.88 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:59 2006