Locus 4879

Sequence ID 2L_DroMel_CAF1
Location 13,903,636 – 13,903,744
Length 108
Max. P 0.555723
window7737

overview

Window 7

Location 13,903,636 – 13,903,744
Length 108
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 81.23
Mean single sequence MFE -34.14
Consensus MFE -25.58
Energy contribution -25.28
Covariance contribution -0.30
Combinations/Pair 1.37
Mean z-score -1.22
Structure conservation index 0.75
SVM decision value 0.04
SVM RNA-class probability 0.555723
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13903636 108 + 22407834
AUUUCGUGCUGGAACAGCUGUCCCACCGACUGCACAUUCCUCUUGGCAUCGUCCAGUUGCUUGGAGGCGGUGUAGAGGGAUCUGUAUG-GACGAUUUGAUGCGAUUUAU
...((((.(....((((..(((((.....((((((...(((((.((((.(.....).)))).)))))..)))))).)))))))))..)-.))))............... ( -34.90)
>DroVir_CAF1 65829 102 + 1
AUAUCGUGCUGGAAUAGUUGUCCAACAUUUUGUACAUUUCGCUUGGCAUCGUCCAGCUGCUUGGAGACGGUGUAUAAGGCGCUGUAAGAAUCAUG--UAUAGGA-----
.....(((.((((.......)))).)))(((((((((..(((((.((((((((...((....)).))))))))...)))))...........)))--)))))).----- ( -25.42)
>DroSec_CAF1 47348 108 + 1
AUUUCGUGCUGGAAUAGCUGCCCCACCGUUUGCACAUUCCUCUUGGCAUCGUCCAGUUGCUUAGAGGCGGUGUAGAGGGACCUGUAUG-GAUGAUUUGACACGAUUUAU
...(((((.(.((((..........((.(((((((...(((((.((((.(.....).)))).)))))..))))))).)).((.....)-)...)))).))))))..... ( -34.60)
>DroSim_CAF1 49613 108 + 1
AUUUCGUGCUGGAAUAGCUGUCCCACCGUUUGCACAUUCCUCUUGGCUUCGUCCAGUUGCUUGGAGGCGGUGUAGAGGGACCUGUAUG-GAUGAUUUGACACGAUUUAU
...(((((.(.((((..(((((((....(((((((...(((((.(((..(.....)..))).)))))..))))))))))))......)-)...)))).))))))..... ( -33.20)
>DroEre_CAF1 47476 108 + 1
AUUUCGUGCUGGAACAGCUGUCCCACCGUCUGCACAUUCUUCUUGGCAUCAUCCAGUUGCUUGGAGGCGGUGUAGAGGGACCUAUUUG-UGCGUUUUGGUAUGGGAGUU
.(..(((((..((((.((.(((((....(((((((...(((((.((((.(.....).)))).)))))..)))))))))))).......-.))))))..)))))..)... ( -41.80)
>DroYak_CAF1 49596 108 + 1
AUUUCGUGCUGGAACAGCUGUCCCACCGUCUGCACAUUCUUCUUGGCAUCAUCCAGUUGCUUGGAGGCGGUGUAGAGGGACCUAUAUG-GGCGAUUUGGUAUAGAUGUU
.....((((..((...((((((((....(((((((...(((((.((((.(.....).)))).)))))..)))))))))))).......-)))..))..))))....... ( -34.91)
>consensus
AUUUCGUGCUGGAACAGCUGUCCCACCGUCUGCACAUUCCUCUUGGCAUCGUCCAGUUGCUUGGAGGCGGUGUAGAGGGACCUGUAUG_GACGAUUUGAUACGAUUUAU
...((((((((...)))).(((((....(((((((...(((((.((((.(.....).)))).)))))..))))))))))))...................))))..... (-25.58 = -25.28 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:58 2006