| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,896,944 – 13,897,053 |
| Length | 109 |
| Max. P | 0.753062 |
| Location | 13,896,944 – 13,897,053 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 81.10 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -21.31 |
| Energy contribution | -21.07 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.753062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13896944 109 + 22407834 UGCUUAUCAUUAUUCUAACAUAUAAUUUUUUACUCCACCAGAUCCCCGCAUCUCAGUGUGAUGCUGGCCAUUGGCA-ACAGUCUGGCCAACUCGGUUUGGGAGUCGAACA ...........................(((.(((((..((((((...(((((.......)))))(((((((((...-.)))..))))))....))))))))))).))).. ( -30.70) >DroSec_CAF1 40690 107 + 1 UGUUUAUCAUAAU-CUAACAUAUAAU-UAUCUCCUCAACAGAUCCCCGCAUCUCAGUGUGAUGCUGGCUAUUGGCUAUCAGUCUGACCAACUCGGU-UGAGAGUCGUACA .............-............-......((((.(((((....(((((.......)))))((((.....))))...)))))(((.....)))-))))......... ( -19.70) >DroSim_CAF1 42944 109 + 1 UGUUUAUCAUAAUUCUAACAUAUAAUUUAUCUAUUCAACAGAUCCCCGCAUCUCAGUGUGAUGCUCGCCAUUGGCA-ACAGUCUGGCCAACUCGGUUUGGGAGUCGAACA ........................................((..((((((((.......)))))..(((((((...-.)))..))))...........)))..))..... ( -23.30) >DroEre_CAF1 40826 109 + 1 CUUUUAUUAUUAUUCUAACAUCAAAUUUAACACUCUACCAGAUCCCCGCAUCUCAGUGUGAUGCUGGCCAUUGGCA-ACAGUCUGGCCAACUCUGUUUGGGAGUCGAACA ........................................((..((((((((.......)))))(((((((((...-.)))..)))))).........)))..))..... ( -28.00) >DroYak_CAF1 42870 109 + 1 CUUCUAUCAUCAUUCUAACAUAUAUUUUCAUACUCCACCAGAUCUCCGCAUCUCAGCGUGAUGCUGGCCAUUGGCA-ACAGUCUGGCCAACUCUGUUUGGGAGUCGAACA ..........................(((..(((((..((((.....(((((.......)))))(((((((((...-.)))..))))))..))))....))))).))).. ( -30.20) >DroAna_CAF1 38346 106 + 1 UACUCUUCAGU-UUCUAAUCAAA-AUUCCUCUCA-UAAAAGGUCUCCGCAUCUCAGUGUGAUGCUUGCCAUCGGUA-AUAGCUUGGCCAACUCUGUUUGGGAGUCGAAUA ...........-...........-((((((((((-....(((.....(((((.......)))))..((((..(((.-...)))))))....)))...))))))..)))). ( -21.10) >consensus UGUUUAUCAUUAUUCUAACAUAUAAUUUAUCACUCCAACAGAUCCCCGCAUCUCAGUGUGAUGCUGGCCAUUGGCA_ACAGUCUGGCCAACUCGGUUUGGGAGUCGAACA ........................................((..((((((((.......)))))((((((..(((.....))))))))).........)))..))..... (-21.31 = -21.07 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:57 2006