Locus 4875

Sequence ID 2L_DroMel_CAF1
Location 13,891,933 – 13,892,028
Length 95
Max. P 0.537374
window7730

overview

Window 0

Location 13,891,933 – 13,892,028
Length 95
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 74.28
Mean single sequence MFE -29.63
Consensus MFE -16.23
Energy contribution -18.40
Covariance contribution 2.17
Combinations/Pair 1.21
Mean z-score -1.49
Structure conservation index 0.55
SVM decision value 0.01
SVM RNA-class probability 0.537374
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13891933 95 - 22407834
AUCGGCCAGGAGAUGAUGGCCUAGAUGACGAUGAUGAUGAUGAUG---------CGGCUGCUGCAUCACGUUCUGCCAUAAUGGCCAACAAAAACUGGACCCGU
...((((((....((.(((((...(((.((.....((((.(((((---------(((...)))))))))))).)).)))...))))).))....)))).))... ( -32.00)
>DroSec_CAF1 35725 95 - 1
AUCGGCCAGGAGAUGAUGGCCGAGAUGACGAUGAUGAUGGUGAUG---------CGGCUGCUGCAUCACGUUCUGCCAUAAUGGCCAACAAAAACUGGACCCGU
...((((((....((.((((((..(((.((.....((..((((((---------(((...)))))))))..)))).)))..)))))).))....)))).))... ( -33.90)
>DroSim_CAF1 37490 95 - 1
AUCGGCCAGGAGAUGAUGGCCGAGAUGACGAUGAUGAUGGUGAUG---------CGGCUGCUGCAUCACGUUCUGCCAUAAUGGCCAACAAAAACUGGACCCGU
...((((((....((.((((((..(((.((.....((..((((((---------(((...)))))))))..)))).)))..)))))).))....)))).))... ( -33.90)
>DroEre_CAF1 35926 89 - 1
UUCGGCCAGGAGAUGAUGGCCGAGAUGAUGAUGACGAUG---------------CGGCUGCUGCAUCACGUUCUGCCAUAAUGGCCAACAAAAACUAGACCCCU
((((((((........))))))))...........((((---------------(((...)))))))..(((..(((.....))).)))............... ( -27.10)
>DroYak_CAF1 37925 104 - 1
AUUCGCCAGGAGAUGAUGGCCGAGAUGAUGAUGAUGAUGGUGGUGCGACUGCUGCUGUUGCUGCAUCACGUACUGCAAUAAUGGCCAACAAAAACUGGACCCCU
.....((((....((.((((((..((.((....)).)).(..(((((..(((.((....)).)))...)))))..).....)))))).))....))))...... ( -31.80)
>DroMoj_CAF1 53041 75 - 1
ACAGCCCCAA---------------U-GCGAUGAUAUUGG----A---------CAGUUGCCGCAUCACGUAAACUUCUAACGUGCAAAAAGCAUGGGAGCCCU
...((((((.---------------(-((..(((..((((----(---------.((((..((.....))..)))))))))..).))....))))))).))... ( -19.10)
>consensus
AUCGGCCAGGAGAUGAUGGCCGAGAUGACGAUGAUGAUGGUGAUG_________CGGCUGCUGCAUCACGUUCUGCCAUAAUGGCCAACAAAAACUGGACCCCU
...((((((....((.((((((..((((((.(((((.((((..................)))))))))))).....)))..)))))).))....)))).))... (-16.23 = -18.40 +   2.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:52 2006