Locus 4874

Sequence ID 2L_DroMel_CAF1
Location 13,888,095 – 13,888,187
Length 92
Max. P 0.600110
window7729

overview

Window 9

Location 13,888,095 – 13,888,187
Length 92
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 94.00
Mean single sequence MFE -23.40
Consensus MFE -19.95
Energy contribution -20.70
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.85
SVM decision value 0.13
SVM RNA-class probability 0.600110
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13888095 92 - 22407834
AUUGGGUUUUCCUUCUCCGAUUCCGAUUUCGAUUCCAGCCGAUCCUCGGCUGCUGUCGUCCC---AACAAAAGGCAAAGAAAAUUAGCAAAGCCC
...(((((((.(((((((...........((((..((((((.....))))))..))))....---.......))...))).....)).))))))) ( -25.05)
>DroSec_CAF1 31897 95 - 1
AUUGGGUUUUCCUUCUCCGAUUCCGAUUUCGAUUCCAGCCGAUCCUCGGCUGCCGUCGACCCAGCAACAAAAGGCAAAGAAAAUUAGCAAAGCCC
...(((((((.((...............(((((..((((((.....))))))..)))))....((........))..........)).))))))) ( -25.50)
>DroSim_CAF1 33644 95 - 1
AUUGGGUUUUCCUUCUCCGAUUCCGAUUUCGAUUCCAGCCGAUCCUCGGCUGCCGUCGACCCAGCAACAAAAGGCAAAGAAAAUUAGCAAAGCCC
...(((((((.((...............(((((..((((((.....))))))..)))))....((........))..........)).))))))) ( -25.50)
>DroEre_CAF1 32066 91 - 1
AUUGGUUUUUC-CUUUCCGAUUCCGAUUUCGAUUCCAGCCGAUCCUCUGCUGCUGUCGACCC---AACAAAAGGCAAAGAAAAUUAGCAAAGCCC
...((((((.(-((((((..........(((((..((((.(.....).))))..)))))...---.......)).)))).......).)))))). ( -17.56)
>consensus
AUUGGGUUUUCCUUCUCCGAUUCCGAUUUCGAUUCCAGCCGAUCCUCGGCUGCCGUCGACCC___AACAAAAGGCAAAGAAAAUUAGCAAAGCCC
...(((((((..................(((((..((((((.....))))))..)))))..............((.((.....)).))))))))) (-19.95 = -20.70 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:51 2006