Locus 4869

Sequence ID 2L_DroMel_CAF1
Location 13,851,564 – 13,851,661
Length 97
Max. P 0.615708
window7722

overview

Window 2

Location 13,851,564 – 13,851,661
Length 97
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 74.09
Mean single sequence MFE -30.05
Consensus MFE -17.67
Energy contribution -18.28
Covariance contribution 0.62
Combinations/Pair 1.23
Mean z-score -1.40
Structure conservation index 0.59
SVM decision value 0.17
SVM RNA-class probability 0.615708
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13851564 97 + 22407834
CAGAGGCACCCU----GGGUGGCUACAUAAGGAUCUCAGCUGGAGGUAGGAAA-----AUAUUCCAA-AGGGAUCUCAA-GCAAGGUCCUC--AGUGGU------ACUCCAAAAAA
..(((.((((..----.))))(((((...(((((((..(((.(((((.((((.-----...))))..-....))))).)-)).))))))).--.)))))------.)))....... ( -30.20)
>DroSec_CAF1 4726 97 + 1
CAGAGGCACCCU----GGGUGGCUACAUGAGGAUCUCAGCUGAAGGUAGGAAA-----ACGUUCCAAAAGGGAUCUCAA-GCAGGGUCCUC--AGUGGU------ACUCCAACAA-
..(((.((((..----.))))(((((.(((((((((..(((..((((.((((.-----...)))).......))))..)-)).))))))))--))))))------.)))......- ( -32.80)
>DroSim_CAF1 6288 96 + 1
CAGAGGCACCCU----GGGUGGUUACAUGAGGAUCUCAGCUGGAGGUAGGAAA-----AUAUUCCAA-AGGGAUCUCAA-GCAGGGUCCUU--AGUGGU------ACUCCAAUAA-
..((((.(((((----(.(((....)))(((.(((((...(((((.((.....-----.))))))).-.))))))))..-.))))))))))--..(((.------...)))....- ( -30.30)
>DroEre_CAF1 4882 96 + 1
CAGAGGCACCCU----GGGUGGCUACAUGAGGAUCUCAGCUGGAGGUAGGAAA-----AUGUUCCA--AGGGAUCUCAA-----GGCCUUU--AGUUUUAGUAGAACUUCA-CAA-
...((.((((..----.)))).))...(((((.((((((((((((((..((..-----..((((..--..)))).))..-----.))))))--))))...).))).)))))-...- ( -26.80)
>DroYak_CAF1 6266 97 + 1
CAGAGGCACCCU----GGGUGGCUGCCUAAGGAUCUCAGCUGGAGGUAGGAAA-----AUGUUCCAC-AGGGAUCUCAA-----GGUCUUU--AGUGGUAGUAGAACUCCA-CAA-
...((.((((..----.)))).))((((..(((((((.((.....)).((((.-----...))))..-.)))))))..)-----)))....--.((((.((.....)))))-)..- ( -29.90)
>DroPer_CAF1 6855 96 + 1
CCGCGGCUCGCUCGAUGGGUGGCUG---------CUCAGCUGGAAGUAGGAAGUAGGAAGGGCCCAGAAAGGACCUUUAUGC--GCUCCUAAGAGUGAU------AUUCGAAC---
..(((((.((((.....))))))))---------)(((.((.....(((((.(((.(((((..((.....)).))))).)))--..)))))..))))).------........--- ( -30.30)
>consensus
CAGAGGCACCCU____GGGUGGCUACAUGAGGAUCUCAGCUGGAGGUAGGAAA_____AUGUUCCAA_AGGGAUCUCAA_GC__GGUCCUU__AGUGGU______ACUCCAACAA_
...((.(((((.....))))).))................(((((...((((.........))))....((((((.........))))))................)))))..... (-17.67 = -18.28 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:44 2006