Locus 4868

Sequence ID 2L_DroMel_CAF1
Location 13,848,190 – 13,848,283
Length 93
Max. P 0.978987
window7721

overview

Window 1

Location 13,848,190 – 13,848,283
Length 93
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 77.79
Mean single sequence MFE -23.42
Consensus MFE -16.56
Energy contribution -16.60
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -2.20
Structure conservation index 0.71
SVM decision value 1.83
SVM RNA-class probability 0.978987
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13848190 93 - 22407834
CGCCUGCCAGGACACAAUAAACUGGGGGGCAACUAAAGAAUGGGUUUCGAUUUUGAGUUGGUAAUAUU--UAAAUUUAAAUCGAUAAU--AUUUCAG
.((((.((((...........)))).)))).......(((...((((((((((.(((((.........--..)))))))))))).)))--..))).. ( -24.10)
>DroSec_CAF1 1377 85 - 1
AGCCUGCCAGGACACAAUGAACUGGGGGGCAACUAAAGAAUGGGUUUCAAUUUUGAGUUGAUUAUAUU--AAAAUUAAGAACGACAA----------
.((((.((((..(.....)..)))).))))..........((.((((.((((((((..........))--))))))..))))..)).---------- ( -20.00)
>DroSim_CAF1 2901 93 - 1
CGCCUGCCAGGACACAAUGAACUGGGGGGCAACUAAAGAAUGGGUUUCAAUUUUGAGUCGGUUAUAUU--AAAAUUAACAACGACAAU--AUUUUAG
.((((.((((..(.....)..)))).))))..((((((((.....)))........((((((((....--.....))))..))))...--..))))) ( -23.50)
>DroEre_CAF1 1504 92 - 1
CGCCUGCCAGGACACAACGAACUGGGGGGCAACUAAAGAAUAGGUAUCGAUUUUGAGUUGCAAGUAUAUACAAA-----AUGGAUAUUUUACUUUAU
.((((.((((..(.....)..)))).))))...(((((...(((((((.((((((.((.........)).))))-----)).)))))))..))))). ( -27.70)
>DroYak_CAF1 2918 88 - 1
CGCCUGCCAGGACACAAUGAACUGGGGGGCAACUAGAAAAUAUGUUGCGAUUUUGAGUUGGGAAUAUG--GAAA-----ACCGACAAU--GCUUCAA
.((((.((((..(.....)..)))).))))..........................(((((.......--....-----.)))))...--....... ( -21.80)
>consensus
CGCCUGCCAGGACACAAUGAACUGGGGGGCAACUAAAGAAUGGGUUUCGAUUUUGAGUUGGUAAUAUU__AAAAUU_A_AACGACAAU__ACUUCAG
.((((.((((...........)))).))))((((..(((((........))))).))))...................................... (-16.56 = -16.60 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:43 2006