| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,845,381 – 13,845,498 |
| Length | 117 |
| Max. P | 0.847566 |
| Location | 13,845,381 – 13,845,498 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 97.15 |
| Mean single sequence MFE | -32.90 |
| Consensus MFE | -31.62 |
| Energy contribution | -31.40 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.847566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13845381 117 - 22407834 AUUAAAAUUAAAAAAUUUGCCAACCGGGGAAUCGUUGGCCGAGAUAAGACAGCAAUAGGCCAUCGAUUGAACGCCCGGUGGCUAAUCAAAUCGUUCACGAGUACGAAGCCACCUUAU .........................(((((((((.(((((.................))))).)))))...).)))(((((((.......(((....)))......))))))).... ( -32.85) >DroSim_CAF1 119 117 - 1 AUUAAAAUUAAAAAAUUUGCCAACCGGGGAAUCGUUGGCCGAGAUAAGACAGCAAUAGGCCAUCGAUUGUACGCCCGGUGGCUAAUCAAAUCGUUCCCGAGUACGAAGCCCCCUUAU ..................((((.(((((((((((.(((((.................))))).)))))...).)))))))))........((((........))))........... ( -32.33) >DroYak_CAF1 117 117 - 1 AUUAAAAUUAAAAAAUUUGCCAACCGGGGAAUCGGUGGUCGAGAUAAGACAGCAAUAGGCCAUCGAUUGAACGCCCGGUGGCUAAUCAAAUCGUUCCCGAGUACGAAGCCCCCUUAU ..................((((.(((((((((((((((((.................)))))))))))...).)))))))))........((((........))))........... ( -33.53) >consensus AUUAAAAUUAAAAAAUUUGCCAACCGGGGAAUCGUUGGCCGAGAUAAGACAGCAAUAGGCCAUCGAUUGAACGCCCGGUGGCUAAUCAAAUCGUUCCCGAGUACGAAGCCCCCUUAU ..................((((.(((((((((((.(((((.................))))).)))))...).)))))))))........((((........))))........... (-31.62 = -31.40 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:41 2006