Locus 4865

Sequence ID 2L_DroMel_CAF1
Location 13,845,263 – 13,845,355
Length 92
Max. P 0.801188
window7718

overview

Window 8

Location 13,845,263 – 13,845,355
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -25.20
Consensus MFE -25.20
Energy contribution -25.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 1.00
SVM decision value 0.62
SVM RNA-class probability 0.801188
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13845263 92 - 22407834
UCUAUAAAAAGCGACUCGUGCGACCGGACGACUGAGUAGUAUAAAUACCGUAGGUACUACGAUCAGUCGGUAGGACUCUCAGUCAAAGCAAU
..........((.....((.(....).))(((((((.(((.....(((((..(((......)))...)))))..))))))))))...))... ( -25.20)
>DroSim_CAF1 1 92 - 1
UCUAUAAAAAGCGACUCGUGCGACCGGACGACUGAGUAGUAUAAAUACCGUAGGUACUACGAUCAGUCGGUAGGACUCUCAGUCAAAGCAAU
..........((.....((.(....).))(((((((.(((.....(((((..(((......)))...)))))..))))))))))...))... ( -25.20)
>DroYak_CAF1 1 92 - 1
UCUAUAAAAAGCGACUCGUGCGACCGGACGACUGAGUAGUAUAAAUACCGUAGGUACUACGAUCAGUCGGUAGGACUCUCAGUCAAAGCAAU
..........((.....((.(....).))(((((((.(((.....(((((..(((......)))...)))))..))))))))))...))... ( -25.20)
>consensus
UCUAUAAAAAGCGACUCGUGCGACCGGACGACUGAGUAGUAUAAAUACCGUAGGUACUACGAUCAGUCGGUAGGACUCUCAGUCAAAGCAAU
..........((.....((.(....).))(((((((.(((.....(((((..(((......)))...)))))..))))))))))...))... (-25.20 = -25.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:40 2006