Locus 4863

Sequence ID 2L_DroMel_CAF1
Location 13,835,354 – 13,835,447
Length 93
Max. P 0.566690
window7714

overview

Window 4

Location 13,835,354 – 13,835,447
Length 93
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 80.79
Mean single sequence MFE -21.72
Consensus MFE -10.98
Energy contribution -12.74
Covariance contribution 1.76
Combinations/Pair 1.21
Mean z-score -2.01
Structure conservation index 0.51
SVM decision value 0.07
SVM RNA-class probability 0.566690
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13835354 93 - 22407834
GUGUACAGUGAUUUCAUUACACCAGACACACAUGUAAUCACGGGAUUAAUUCG-GAAUAUUACACUUAUGGAGUAAGCACUGUACUAUGAAGUG
..((((((((......((((.(((........((((((..((((.....))))-....))))))....))).)))).))))))))......... ( -20.20)
>DroSec_CAF1 1932 91 - 1
GUAU-UAGUGUUUGCAUUACAUUUGACAAACAUGUAAUCACGGCAUGUUUUUAUGA--AUUACAUUUAUGGAGUAAGCACUGUACUAUGAAGUG
((((-.(((((((((.............(((((((.......)))))))(((((((--((...))))))))))))))))))))))......... ( -22.50)
>DroSim_CAF1 3085 91 - 1
GUAU-UAGUGUUUGCAUUACAUUUGACAAACAUGUAAUCACGGCAUGUUUUUAUGA--AUUACAUUUAUGGAGUAAGCACUGUACUAUGAAGUG
((((-.(((((((((.............(((((((.......)))))))(((((((--((...))))))))))))))))))))))......... ( -22.50)
>DroEre_CAF1 3055 93 - 1
CCAUUCAGUGCUUACAUAACAGUAGAUAAACAUGUAAUUACUGCAGGUUUUUGUGA-CUUUACAUUUAUGGAGUAAGCACUGUACUAUGAACUG
.(((.((((((((((....((((((.((......)).)))))).(((((.....))-)))............))))))))))....)))..... ( -22.70)
>DroYak_CAF1 2908 93 - 1
CCAUUCAGGGUUUUCAUAACAGUACACAAUCAUGUAAUUACUGCAUGUUUUUGUGA-UAUUCAAUUUAUGGAGUUUGCACUGUACUAUGAAGUU
((.....))..((((((((((((.(((((.((((((.....))))))...))))).-..((((.....))))......)))))..))))))).. ( -20.70)
>consensus
GUAU_CAGUGUUUGCAUUACAGUAGACAAACAUGUAAUCACGGCAUGUUUUUGUGA__AUUACAUUUAUGGAGUAAGCACUGUACUAUGAAGUG
.....((((((((((.............(((((((.......)))))))(((((((.........)))))))))))))))))............ (-10.98 = -12.74 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:37 2006