| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,833,393 – 13,833,507 |
| Length | 114 |
| Max. P | 0.806352 |
| Location | 13,833,393 – 13,833,507 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.15 |
| Mean single sequence MFE | -36.28 |
| Consensus MFE | -26.60 |
| Energy contribution | -25.97 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13833393 114 - 22407834 CAGUUCCGUGUCCUCCAGGACGAACUUUACGUUGUCGUCCGUCAGCUCGGUUAUCUGCACGGACGGCUGGUUGGCGUACGGCAUUGCGGUUUUGUUUUGAUGAAAUUAAAGGG-----U- (((..((((((((....))))...........((((((.(((((((.((((..(((....)))..))))))))))).))))))..))))..)))(((((((...)))))))..-----.- ( -40.50) >DroGri_CAF1 3699 109 - 1 UAACUCGGUGUCCUCCAGCACAAACUUGACAUUGUCGUCCGUCAAUUCGGUUAUUUGUACAGAAGGUUGAUUGGCAUACGGCAUU-----------UUUGUCAAGAUACAAAAAUAUAAA .......((((......))))...(((((((.((((((..((((((.(..(..(((....)))..)..)))))))..))))))..-----------..)))))))............... ( -26.80) >DroSim_CAF1 1124 116 - 1 CAGUUCCGUGUCCUCCAGGACGAACUUCACGUUGUCGUCCGUCAGCUCGGUUAUCUGCACGGACGGCUGGUUGGCGUACGGCAUUGCGGCUUUGUUUUGAUGAAAUUAAAGGAA---UU- .((((((..((((....))))((((....(((((((((.(((((((.((((..(((....)))..))))))))))).))))))..))).....)))).............))))---))- ( -42.80) >DroEre_CAF1 1091 116 - 1 CAAUUCCGUGUCCUCCAGGACGAACUUCACGUUGUCGUCCGUCAGCUCGGUUAUCUGCACGGACGGCUGGUUGGCGUACGGCAUAGCGGCUUUGUUUUGAUGAAAUUAAAGGAA---GU- ........(((((....))))).(((((.(((((((((.(((((((.((((..(((....)))..))))))))))).))))))..))).(((((.(((....))).))))))))---))- ( -42.00) >DroYak_CAF1 968 116 - 1 CAAUUCCGUGUCCUCCAGGACGAACUUCACGUUGUCGUCCGUCAGCUCGGUUAUCUGCACGGACGGCUGGUUGGCGUACGGCAUAGCGGCUUUGUUUUGAUGAAAUUAAAGGAA---GU- ........(((((....))))).(((((.(((((((((.(((((((.((((..(((....)))..))))))))))).))))))..))).(((((.(((....))).))))))))---))- ( -42.00) >DroMoj_CAF1 3671 106 - 1 CAAUUCGGUAUCCUCGAGCACAAACUUGACAUUGUCGUCCGUCAAUUCGGUUAUUUGCACGGAUGGUUGAUUGGCAUACGGCAUU-----------UUACUGUACUUAAAGAAA---AUA .....(((((...(((((......)))))...((((((..((((((.(((..((((....))))..)))))))))..))))))..-----------.)))))............---... ( -23.60) >consensus CAAUUCCGUGUCCUCCAGGACGAACUUCACGUUGUCGUCCGUCAGCUCGGUUAUCUGCACGGACGGCUGGUUGGCGUACGGCAUUGCGGCUUUGUUUUGAUGAAAUUAAAGGAA___AU_ ........(((((....)))))..........((((((.(((((((.((((..(((....)))..))))))))))).))))))..................................... (-26.60 = -25.97 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:36 2006