| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,825,918 – 13,826,034 |
| Length | 116 |
| Max. P | 0.867020 |
| Location | 13,825,918 – 13,826,034 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.69 |
| Mean single sequence MFE | -48.63 |
| Consensus MFE | -25.34 |
| Energy contribution | -25.65 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.867020 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13825918 116 - 22407834 AGAUUGCCCCCAAGCUGCUUUCCCUCUGCUGGGAAGGAUAUCCCUUGCACUACGAGAGGGAGCAAGGCUGGGGCUUCCUGGUUCCAUUUCGCAGCGAUU----CAGAAGGAGUAGAUCGA .(((((((((..((((...((((((((((.((((......))))..))......))))))))...)))))))))(((((.........(((...)))..----....)))))..)))).. ( -40.16) >DroVir_CAF1 16182 118 - 1 AAAUAGCGCCCAAGCUGUUGUCCCUUUGCUGGGAAGGCUAUCCGCUGCACUACCAACGCGAACAUGGCUGGGGCUUUCUGGUGCCCUUUCGCAGCGUCGAGUGCAGCGGCAA--CAGCAA .............(((((((((((......)))).......((((((((((....((((.......((.(((((........)))))...)).))))..)))))))))))))--)))).. ( -51.40) >DroPse_CAF1 21213 116 - 1 AGAUUGCCCCUAAGCUGCUUUCCCUCUGCUGGGAGGGAUAUCCACUUCACUACCAGCGGGAACACGGCUGGGGCUUCCUGGUUCCCUUUCGCAGCGAUG----CAGCGGGAGUGAAUCGA .((..(((((..(((((..(((((.(((.(((((((........)))).))).))).)))))..)))))))))).)).((((((.((..(((.((...)----).)))..)).)))))). ( -51.80) >DroGri_CAF1 14861 118 - 1 AGAUUGCACCCAAGCUACUCUCCCUCUGCUGGGAGGGCUAUCCACUGCAUUAUCAGAAGGGGCAUGGCUGGGGCUUCCUGGUGCCCUUUCGCAGCGGCGACAACAGCCGGCA--GACUGA .....((......))..(((((((......))))))).......((((.......((((((((...((..((....))..))))))))))....((((.......)))))))--)..... ( -45.90) >DroAna_CAF1 11339 116 - 1 AAAUUGCUCCAAAGCUUUUGUCCCUCUGCUGGGAGGGAUAUCCACUCCACUACGAGAGGGAACAAGGCUGGGGCUUCCUAGUUCCCUUUCGGAGUGAAG----GUGCGGGGAAUGAGCGG ....(((((.........(((((((((....)))))))))((((((.((((.(((((((((.....((((((....))))))))))))))).))))..)----))).)).....))))). ( -48.60) >DroPer_CAF1 21550 116 - 1 AGAUUGCCCCUAAGCUGCUUUCCCUCUGCUGGGAGGGAUAUCCCCUUCACUACCAGCGGGAACACGGCUGGGGCUUCCUGGUUCCCUUUCGCAGCGAUG----CAGCGGGAGUGGAUCGA .((..(((((..(((((..(((((.(((.((((((((......))))).))).))).)))))..)))))))))).)).((((((.((..(((.((...)----).)))..)).)))))). ( -53.90) >consensus AGAUUGCCCCCAAGCUGCUUUCCCUCUGCUGGGAGGGAUAUCCACUGCACUACCAGAGGGAACAAGGCUGGGGCUUCCUGGUUCCCUUUCGCAGCGAUG____CAGCGGGAAU_GAUCGA .....(((((..(((((..(((((.(((.((((((((....)).)).).))).))).)))))..)))))))))).......(((((.....................)))))........ (-25.34 = -25.65 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:32 2006