| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,809,281 – 13,809,401 |
| Length | 120 |
| Max. P | 0.606555 |
| Location | 13,809,281 – 13,809,401 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.39 |
| Mean single sequence MFE | -47.52 |
| Consensus MFE | -24.31 |
| Energy contribution | -24.12 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13809281 120 + 22407834 GUUCCUUAAGGCUGGCAAUCACCAUGCCGAACUGGACAAGGUGACCAGCCUGCUGCAGUUCGUGCUGCACAAGGGCGAUCGCGUCACCCUCCCCCAGGGCUGUGAUCCCGGCCAGCUGCU .........(((((((.(((((...(((...((((....(((((((.((((..((((((....))))))...))))....).)))))).....))))))).)))))....)))))))... ( -51.00) >DroVir_CAF1 23407 120 + 1 UUUCCUGCAGCCGGGCGAUCACCAUGCUGAGCUGGAUAAGGUCAGCAGCCUGUUGCAGUUUGUGCUGCACAAGGGCGAUCGCGUUACCCUGCCACAGGGAUGUGAUCCUGGCCAGCUGUU ......((.(((((((((((....((((((.((.....)).))))))((((..((((((....))))))...))))))))))....(((((...)))))........)))))..)).... ( -54.30) >DroGri_CAF1 17775 120 + 1 CUUCCUGCAGCCUGGCGAUCAUCACGAGGAGCUCGACAAGGUGAGCAGCGUGCUGCAGUUUGUGUUGCAUAAGGGCGAUCGGGUCACAUUGCCCCAGGGCUGUGAUCCCGGCAAGCUGCU ....((((.((((..(((...((.....))..)))...))))..))))......((((((((((((((......)))))(((((((((..(((....)))))))).))))))))))))). ( -49.00) >DroWil_CAF1 27201 120 + 1 UUUCCUAGAAGCUGGCGAUCACAAUGCUGAACUUGAUAAGGUCAGCAGCUUGUUGCAAUUCGUGUUGCACAAGGGAGAUCGUGUCACCCUGCCUCAGGGCUGUGAUCCCGGCAAAUUGUU ..........(((((.(((((((.((((((.(((....)))))))))...(((.(((((....))))))))((((.(((...))).))))(((....)))))))))))))))........ ( -45.10) >DroMoj_CAF1 20655 120 + 1 AUUCCUACAGCCGGGCAAUCAUCACGCAGAGCUGGACAAAGUGAGCAGCUUGUUGCAGUUUGUUCUGCACAAGGGCGAUCGCGUUACUCUGCCCCAGGGCUGCGAUCCUGGCAAGCUGCU .......(((((..((.........)).).)))).........(((((((((((((((......)))).....((.(((((((.......(((....))))))))))))))))))))))) ( -43.51) >DroAna_CAF1 15277 120 + 1 AUUCCUGAAGGCUGGAGACCAUCAUGCUGAGUUAGACAAGGUUACCAGCCUUCUGCAGUUCGUCCUGCACAAGGGAGAUCGUGUGACUCUACCCGGAGGCUGCGAUCCCAGCAAACUACU .((((((((((((((.((((.((.....))(.....)..)))).)))))))))(((((......)))))..)))))(((((((...((((....))))..)))))))............. ( -42.20) >consensus AUUCCUGCAGCCUGGCGAUCACCAUGCUGAGCUGGACAAGGUGAGCAGCCUGCUGCAGUUCGUGCUGCACAAGGGCGAUCGCGUCACCCUGCCCCAGGGCUGUGAUCCCGGCAAGCUGCU ...((........))............................((((((.((((((((......)))).....((.(((((((...((((.....)))).))))))))))))).)))))) (-24.31 = -24.12 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:26 2006