Locus 4855

Sequence ID 2L_DroMel_CAF1
Location 13,808,779 – 13,808,869
Length 90
Max. P 0.658050
window7702

overview

Window 2

Location 13,808,779 – 13,808,869
Length 90
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 79.35
Mean single sequence MFE -35.45
Consensus MFE -21.96
Energy contribution -21.63
Covariance contribution -0.33
Combinations/Pair 1.27
Mean z-score -1.60
Structure conservation index 0.62
SVM decision value 0.26
SVM RNA-class probability 0.658050
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13808779 90 - 22407834
UCCACGGGCGACUGACGAUGUCCCGACGCCUGUGGGUACUCCUUGGCCCAGUGGGCAGGUCCUGAAAUAGGAACAUUGAAUGGGGCGGG--U
((((((((((...(((...)))....)))))))))).....((((.((((.....(((.(((((...)))))...)))..)))).))))--. ( -34.90)
>DroPse_CAF1 16189 78 - 1
UCCACGGGCGACUGGCGAUGUCCGGACGCCUGUGGAUAGUCCUUGGCCCAGUGCGCGGGUCCUGGGG-AA-UACAAUGAA------------
((((((((((.((((......)))).))))))))))...((((((((((.......)))))..))))-).-.........------------ ( -35.50)
>DroEre_CAF1 14580 87 - 1
UCCACGGGCGACUGACGGUGUCCCGACGCUUGUGGGUAGUCCUUGGCCCAGUGGGCAGGUCCUGGAA---GGACAUUGAAUGGGACGGG--U
((((((((((.....(((....))).))))))))))..(((((..((((...))))..((((.....---)))).......)))))...--. ( -34.90)
>DroYak_CAF1 14850 90 - 1
UCCACAGGCGACUGGCGGUGUCCGGACGCUUGUGGGUAGUCCUUGGCCCAGUGGGCAGGUCCUGGAAAAGGAAUAUUGAAUGGGGCGGG--U
((((((((((.((((......)))).)))))))))).....((((.((((.....(((.((((.....))))...)))..)))).))))--. ( -38.80)
>DroAna_CAF1 14777 91 - 1
UCAACGGGGGACUGGCGAUGUCCCGAUGCCUGUGGGUAGUCCUUGGCCCAGUGGGCAGGUCCUGAAAUAAU-CCAAUGAAAGGAGAGGGGCU
((..(((....)))..)).(((((..(((((((((((........))))).))))))..((((...((...-...))...))))..))))). ( -33.10)
>DroPer_CAF1 16351 78 - 1
UCCACGGGCGACUGGCGAUGUCCGGACGCCUGUGGAUAGUCCUUGGCCCAGUGCGCGGGUCCUGGGG-AA-UACAAUGAA------------
((((((((((.((((......)))).))))))))))...((((((((((.......)))))..))))-).-.........------------ ( -35.50)
>consensus
UCCACGGGCGACUGGCGAUGUCCCGACGCCUGUGGGUAGUCCUUGGCCCAGUGGGCAGGUCCUGGAA_AAGAACAAUGAAUGGGGCGGG__U
((((((((((...(((...)))....))))))))))(((..((((.((....)).))))..)))............................ (-21.96 = -21.63 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:24 2006