| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,803,574 – 13,803,667 |
| Length | 93 |
| Max. P | 0.524828 |
| Location | 13,803,574 – 13,803,667 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 83.40 |
| Mean single sequence MFE | -40.30 |
| Consensus MFE | -26.72 |
| Energy contribution | -27.75 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13803574 93 - 22407834 UGGAGCGUCGACUGUAUGGUAAGUCCGACGGUCUCAGACUGACGGACUCGGGGCAGCGCU---GCUGACUUGAAAGUCGGCAGCGACUGCGAAGCG ....((.((..(((.......((((((.(((((...))))).))))))))).((((((((---(((((((....))))))))))).)))))).)). ( -45.41) >DroGri_CAF1 10053 88 - 1 -GGAGCG-CGUCUGUUUAGUUAGUCCGCUGGCUGUAGACUGUUCGAUGCGAGGCAGCGCC---GCUGACUUCGAAGCCGU-UGCGCCAACUAAA-- -((.(((-((.((....(((((((.(((((.(((((..........))).)).)))))..---)))))))....)).)).-))).)).......-- ( -29.30) >DroSec_CAF1 9714 96 - 1 UGGAGCGUCGACUGUUUGGUAAGUCCGACGGUCUCAGACUGACGGACUCGGGGCAGCGCUGCUGCUGACUUGAAAGCCGGCAGCGACUGCGAAGCG ....((.(((.((((((.(..((((((.(((((...))))).))))))).))))))((((((((((........)).))))))))....))).)). ( -41.70) >DroSim_CAF1 9624 96 - 1 UGGAGCGUCGACUGUUUGGUAAGUCCGACGGUCUCAGACUGACGGACUCGGGGCAGCGCUGCUGCUGACUUGAAAGCCGGCAGCGACUGCGAAGCG ....((.(((.((((((.(..((((((.(((((...))))).))))))).))))))((((((((((........)).))))))))....))).)). ( -41.70) >DroEre_CAF1 9464 93 - 1 UGGAGCGUCGACUGUGUGCUAAGUCCGUCGGCUUCAGACUGAUGGACUCGGGGCAGCGCU---GCUGACUUGGAAAACGGCAGCGACUGCGAAGCG ....((.((.........(..(((((((((((....).))))))))))..).((((((((---((((..((....)))))))))).)))))).)). ( -41.70) >DroYak_CAF1 9654 93 - 1 CGGAGCGUCGACUGUGUGCUAAGUCCGACGGUUUCAGACUGACGGACUCGGGGCAGCGCU---GCCGACUUGAAAACCGGCAGCGACUGCGAAGCG ....((.((.........(..((((((.(((((...))))).))))))..).((((((((---((((..........)))))))).)))))).)). ( -42.00) >consensus UGGAGCGUCGACUGUUUGGUAAGUCCGACGGUCUCAGACUGACGGACUCGGGGCAGCGCU___GCUGACUUGAAAGCCGGCAGCGACUGCGAAGCG ....((((((.((((.((((..(((((.(((((...))))).)))))(((((.((((......)))).)))))..)))))))))))).))...... (-26.72 = -27.75 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:24 2006