Locus 4850

Sequence ID 2L_DroMel_CAF1
Location 13,792,398 – 13,792,504
Length 106
Max. P 0.579395
window7697

overview

Window 7

Location 13,792,398 – 13,792,504
Length 106
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 83.49
Mean single sequence MFE -42.23
Consensus MFE -28.47
Energy contribution -30.03
Covariance contribution 1.56
Combinations/Pair 1.23
Mean z-score -2.06
Structure conservation index 0.67
SVM decision value 0.09
SVM RNA-class probability 0.579395
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13792398 106 - 22407834
GCAAUGGGCAGGGCUGUGCUGGCCGCCGGAUAUGG---------UGUUCGACUUAGCUCACGCAUGGAGCUGGUCAACGGCCUCAGCACGUCCAGCAAUUGCUGACACAAAUCCA
(((((..((.((((.(((((((((((((....)))---------)(((.((((.(((((.......))))))))))))))))..))))))))).)).)))))............. ( -45.10)
>DroSec_CAF1 8384 106 - 1
GCAAUGGGCAGGGCUGUGCUGGCCGCCGGAUAUGG---------UGUUCGACUUAGCUCACGCAUAGAGCUGGUCAAUGGUCUCAGCACGUCCAGCAAUUGCUGACACAAAUCCA
(((((..((.((((.(((((((((((((....)))---------)....((((.(((((.......)))))))))...)))..)))))))))).)).)))))............. ( -41.70)
>DroSim_CAF1 9089 106 - 1
GCAAUGGGCAGGGCUGUGCUGGCCGCCGGAUAUGG---------UGUUCGACUUAGCUCACGCAUAGAGCUGGUCAAUGGUCUCAGCACGUCCAGCAAUUGCUGACACAAAUCCA
(((((..((.((((.(((((((((((((....)))---------)....((((.(((((.......)))))))))...)))..)))))))))).)).)))))............. ( -41.70)
>DroEre_CAF1 9047 106 - 1
GUAAUGGGCAGGGCUGUGCUGGCCGCCGGAUAGGG---------UGUUCGACUUAGCUCACGCAUGGAGCUAGUCAACGGUCUCAGCACGGCCACCAAUUGCUGACACAAAUCCA
(((((.((...((((((((((((((((......))---------)(((.((((.(((((.......)))))))))))))))..)))))))))).)).)))))............. ( -44.60)
>DroYak_CAF1 8412 106 - 1
GCAAUGGGCAGGGCCGUGCUGGCCGCCGGAUACGG---------GGCUCGAGUUAGCUCACGCAUGGAACUGGUCAACGGUCUAAGCACGUCCAGCAAUUGCUGACACAAAUCUA
....(((.(((..((((((.((((.(((....)))---------)))).(((....)))..))))))..))).))).............(((.(((....))))))......... ( -40.10)
>DroPer_CAF1 12852 115 - 1
ACUAUGGGCAAGGCCUUGCUAGCCACGGGAAAUGACGUUUCUCCUGCUCGACUGAGCUCCUUCAUCGAGCUGGCCAGCGGCUUCAGGACUGCCAGCAGCUCCCGACACUGUUCCA
....((((((.((((..(((.((((.(((((((...)))))))..((((((.((((....)))))))))))))).)))))))((.((((((....))).))).))...)).)))) ( -40.20)
>consensus
GCAAUGGGCAGGGCUGUGCUGGCCGCCGGAUAUGG_________UGUUCGACUUAGCUCACGCAUGGAGCUGGUCAACGGUCUCAGCACGUCCAGCAAUUGCUGACACAAAUCCA
(((((..((.((((.(((((((((.(((....)))..........(((.((((.(((((.......))))))))))))))))..))))))))).)).)))))............. (-28.47 = -30.03 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:20 2006