Locus 485

Sequence ID 2L_DroMel_CAF1
Location 1,438,908 – 1,439,021
Length 113
Max. P 0.960038
window777

overview

Window 7

Location 1,438,908 – 1,439,021
Length 113
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 76.40
Mean single sequence MFE -25.61
Consensus MFE -11.35
Energy contribution -12.80
Covariance contribution 1.45
Combinations/Pair 1.20
Mean z-score -2.60
Structure conservation index 0.44
SVM decision value 1.51
SVM RNA-class probability 0.960038
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1438908 113 - 22407834
GCCUUUUUCUU--CUUCUGUGUCAGCUGUUGGUUUUUUU-UUA-UUUGUGCACAAAUAUGCACAGAAAAUGAAGAAAUAAUUUGAAAAU-UCAGCAGCACAGAAUGCACAUAUAAACA
...........--.((((((((..((((...((((((((-...-((((((((......))))))))....))))))))...........-.)))).)))))))).............. ( -26.76)
>DroVir_CAF1 93482 97 - 1
-----UGGCUU--GUCUUGUGCCAGUUUCUUGUUG---U-----UUUUUGCAUAU--UUUAGCACAAAAUGAAGAAAUAAUUUGAAA---UCAUGAACAAAC-ACACACACACGGACA
-----.....(--((((((((...((((((..(..---(-----(((.(((....--....))).))))..)))))))....((...---.)).........-.....)))).))))) ( -16.20)
>DroSec_CAF1 56892 110 - 1
GCCUUUUUCUU--CUUCUGUGUCAGCUGCUGGUUU---U-UUA-UUUGUGCACAAAUAUGCACAGAAAAUGAAGAAAUAAUUUGAAAAU-UCAGCAGCACAGAAUGCACAUAUAAACA
...........--.((((((....(((((((..((---(-(((-((((((((......))))))))......(....)....)))))).-.))))))))))))).............. ( -28.70)
>DroSim_CAF1 58128 110 - 1
GCCUUUUUCUU--CUUCUGUGUCAGCUGCUGGUUU---U-UUA-UUUGUGCACAAAUAUGCACAGAAAAUGAAGAAAUAAUUUGAAAAU-UCAGCAGCACAGAAUGCACAUAUAAACA
...........--.((((((....(((((((..((---(-(((-((((((((......))))))))......(....)....)))))).-.))))))))))))).............. ( -28.70)
>DroEre_CAF1 59233 110 - 1
GCCUUUUUCUU--CUUCUGUGUCAGCUGCUGGUUU---U-UUA-UUUGUGCACAAAUAUGCACAGAAAAUGAAGAAAUAAUUUGAAAAU-UCAGCAGCACAGAAUGCACAUAUAAACA
...........--.((((((....(((((((..((---(-(((-((((((((......))))))))......(....)....)))))).-.))))))))))))).............. ( -28.70)
>DroMoj_CAF1 92753 107 - 1
-----UGGCUUAUGUCUUGUGCUAGUUUCUUGUUU---UUUCAUUUUCUGCAUAU--UUUAGCACAAAAUGAAGAAAUAAUUUGAAUGAUACACACACAGAC-ACACACACAGAGACA
-----.......(((((((((.((..(((((((((---(((((((((.(((....--....))).)))))))))))))))...)))...))))))...))))-).............. ( -24.60)
>consensus
GCCUUUUUCUU__CUUCUGUGUCAGCUGCUGGUUU___U_UUA_UUUGUGCACAAAUAUGCACAGAAAAUGAAGAAAUAAUUUGAAAAU_UCAGCAGCACAGAAUGCACAUAUAAACA
.................(((((..((((((((............((((((((......))))))))((((.........)))).......)))))))).......)))))........ (-11.35 = -12.80 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:17 2006