Locus 4849

Sequence ID 2L_DroMel_CAF1
Location 13,782,786 – 13,782,876
Length 90
Max. P 0.582946
window7696

overview

Window 6

Location 13,782,786 – 13,782,876
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 86.67
Mean single sequence MFE -21.57
Consensus MFE -14.32
Energy contribution -14.00
Covariance contribution -0.32
Combinations/Pair 1.21
Mean z-score -1.98
Structure conservation index 0.66
SVM decision value 0.10
SVM RNA-class probability 0.582946
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13782786 90 - 22407834
AGACGCAGGGAAAAGGAGGAACGGCGCGCUGAAAAGAAACGUAAGCGUCGAAAACUCGAUGUUGGUCACGAAAGUUCUGGCGAAGAGGAG
.(((((........(......).(((..((....))...)))..))))).....(((..(((..(..((....)).)..)))..)))... ( -24.20)
>DroSec_CAF1 11304 90 - 1
AGACGCAGGGAAAAGGAGGAACGUCGCGCUGAAAAGAAACGUAAGCGUCGAAAGCUCGAUGUUGAUCACGAAAGUUCUGGCGAAGAGGAA
...(((..(((....((..(((((((.(((.....((..(....)..))...))).)))))))..))((....))))).)))........ ( -25.90)
>DroSim_CAF1 11300 90 - 1
AGACGCAGGGAAAAGGAGGAACGUCGCGCUGAAAAGAAACGUAAGCGUCGAAAGCUCGAUGUUGAUCACGAAAGUUCUGGCGAAGAGGAG
...(((..(((....((..(((((((.(((.....((..(....)..))...))).)))))))..))((....))))).)))........ ( -25.90)
>DroEre_CAF1 11617 90 - 1
CAACGCAGACAAAAAAAGGAGCUUCGCGCUGAGAAAAAACGUAAACGUCGAAAGCUUGAUGAUAAACAAAAAAGUUCUGGCGAAGAUGUA
.....................((((((.(.(((............((((((....)))))).............))).)))))))..... ( -13.81)
>DroYak_CAF1 11486 90 - 1
CGACGUAGGGAAAAGGAGGAACGGCGCGCUGAGAAAAAACGUAAGCGUCGAAAGCUUGACAUUGAUCAAGAAAGUUCUGGCGAAGAUGAG
...(((.((((..........((((((.................))))))....(((((......)))))....)))).)))........ ( -18.03)
>consensus
AGACGCAGGGAAAAGGAGGAACGUCGCGCUGAAAAGAAACGUAAGCGUCGAAAGCUCGAUGUUGAUCACGAAAGUUCUGGCGAAGAGGAG
...(((...........(((((...(((...........))).((((((((....))))))))..........))))).)))........ (-14.32 = -14.00 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:19 2006