Locus 4841

Sequence ID 2L_DroMel_CAF1
Location 13,765,695 – 13,765,788
Length 93
Max. P 0.938690
window7671

overview

Window 1

Location 13,765,695 – 13,765,788
Length 93
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 93.39
Mean single sequence MFE -32.36
Consensus MFE -24.66
Energy contribution -24.42
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -2.65
Structure conservation index 0.76
SVM decision value 1.29
SVM RNA-class probability 0.938690
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13765695 93 - 22407834
UGGCUUGAUCGCCUCCAACGCACUCGAGAAAUUGGUGGUGGUUUGGCCACAAACUGUUGCACAAAAC-GUGUAACAGGCGG-UCCACCUACUCUC
(((((.(((((((.((((..(......)...)))).))))))).)))))....(((((((((.....-)))))))))..((-....))....... ( -35.30)
>DroSec_CAF1 28361 90 - 1
UGGCUUGAUCGCCUCCAACGCACUCGAGAAAUUGGU---GGUUCGGCCACAAACUGUUGCACAAAAC-GUGUAACAGGCGG-UCCACCUACUCUC
.((...(((((((.(((((.(((.(((....)))))---)))).))........((((((((.....-)))))))))))))-))..))....... ( -31.40)
>DroSim_CAF1 31417 90 - 1
UGGCUUGAUCGCCUCCAACGCACUCGAGAAAUUGGU---GGUUCGGCCACAAACUGUUGCACAAAAC-GUGUAACAGGCGG-UCCACCUACUCUC
.((...(((((((.(((((.(((.(((....)))))---)))).))........((((((((.....-)))))))))))))-))..))....... ( -31.40)
>DroEre_CAF1 30154 91 - 1
UGGCUUGAUCGCCUCCAACGUACUCGAGAAAUUGGU---GGUUUGGCCACAAACUGUUGCACAAAAG-GUGUAACAGGCGGGCACACCUACUCUC
.(((......)))............((((....(((---(.....(((.....(((((((((.....-)))))))))...))).))))...)))) ( -30.70)
>DroYak_CAF1 31324 92 - 1
UGGCUUGAUCGCCUCCAACGUACUCGAGAAAUUGGU---GGUUCGGCCACAAACUGUUGCACAAGCGUGUGUAACAGGCGGAUCCACCCACUCUC
.(((......)))............((((....(((---((.((.(((......(((((((((....)))))))))))).)).)))))...)))) ( -33.00)
>consensus
UGGCUUGAUCGCCUCCAACGCACUCGAGAAAUUGGU___GGUUCGGCCACAAACUGUUGCACAAAAC_GUGUAACAGGCGG_UCCACCUACUCUC
(((((.((((((.......))..((((....))))....)))).)))))....(((((((((......))))))))).................. (-24.66 = -24.42 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:56 2006