Locus 4839

Sequence ID 2L_DroMel_CAF1
Location 13,763,764 – 13,763,882
Length 118
Max. P 0.956895
window7669

overview

Window 9

Location 13,763,764 – 13,763,882
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.88
Mean single sequence MFE -31.55
Consensus MFE -26.91
Energy contribution -27.43
Covariance contribution 0.53
Combinations/Pair 1.03
Mean z-score -2.37
Structure conservation index 0.85
SVM decision value 1.47
SVM RNA-class probability 0.956895
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13763764 118 + 22407834
A--GCCAGCCAUGUUUAUGAUAUGGCGAUGGUGCAAAUAGUUUGCUAAUUUUUCCUUUUCGGAAAUUAGAGCAUAAACUUUUGCUGUAGCCGCUCUUAAAACGUGCAGCUCCCUUCCACU
.--((((((((((((...))))))))..))))(((((.((((((((....(((((.....)))))....))))..)))))))))...(((.((.(.......).)).))).......... ( -32.60)
>DroSec_CAF1 26241 118 + 1
A--GCCAGCCAUGUUUAUGAUAUGGCGAUGGUGCAAAUAGUUUGCUAAUUUUUCCUUUUCGGAAAUUAGAGCAUAAACUUUUGCUCUAGCCGCUCUUAAAACUUGCAGCUCCCUUCCACU
.--((((((((((((...))))))))..))))(((((.((((((((....(((((.....)))))....))))..)))))))))...(((.((...........)).))).......... ( -32.20)
>DroAna_CAF1 48079 120 + 1
AGAGCCAGCCAUGUUUAUGAUAUGGCGAUGGUGCAAAUAGUUUGCUAAUUUUUCCUUUUCGGAAAUUAGAGCAUAAACUUUUGCUGUUGGCGCUCUUAAAACUUGCAGCUCGCUUCCGCA
.((((..((((((((...))))))))((.(((((.((((((.((((....(((((.....)))))....)))).........)))))).))))).))..........))))((....)). ( -36.50)
>DroSim_CAF1 29297 118 + 1
A--GCCAGCCAUGUUUAUGAUAUGGCGAUGGUGCAAAUAGUUUGCUAAUUUUUCCUUUUCGGAAAUUAGAGCAUAAACUUUUGCUCUAGCCGCUCUUAAAACUUGCAGCUCCCUUCCACU
.--((((((((((((...))))))))..))))(((((.((((((((....(((((.....)))))....))))..)))))))))...(((.((...........)).))).......... ( -32.20)
>DroEre_CAF1 28003 113 + 1
A--GCCAGACAUGUUUAUGAUAUGGCGAUGGUGCAAAUAGUUUGCUAAUUUUUCCUUUUCGGAAAUUAGAGCAUAAACUUUUGCUGAAGCGGCUCUUAAAACUUGCAGCUCCCCU-----
.--((((..((((((...))))))....))))(((((.((((((((....(((((.....)))))....))))..)))))))))...(((.((...........)).))).....----- ( -27.40)
>DroYak_CAF1 29330 117 + 1
A--GCUAGCCAUGUUUAUGAUAUGGCGAUGGUGCAAAUAGUUUGCUAAUUUUUCCUUUUCGGAAAUUAGAGCAUAAACUUUU-CUGUAGCCGCUCUUAAAACUUGCAGAUCCCCUCCACU
.--((..((((((((...))))))))(((((((((...((((((((....(((((.....)))))....))))..))))...-.)))).))).)).........)).............. ( -28.40)
>consensus
A__GCCAGCCAUGUUUAUGAUAUGGCGAUGGUGCAAAUAGUUUGCUAAUUUUUCCUUUUCGGAAAUUAGAGCAUAAACUUUUGCUGUAGCCGCUCUUAAAACUUGCAGCUCCCUUCCACU
...((((((((((((...))))))))..))))(((((.((((((((....(((((.....)))))....))))..)))))))))....((.((...........)).))........... (-26.91 = -27.43 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:54 2006