Locus 4835

Sequence ID 2L_DroMel_CAF1
Location 13,758,169 – 13,758,288
Length 119
Max. P 0.958051
window7662

overview

Window 2

Location 13,758,169 – 13,758,288
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.81
Mean single sequence MFE -21.38
Consensus MFE -19.67
Energy contribution -20.18
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.92
SVM decision value 1.48
SVM RNA-class probability 0.958051
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13758169 119 + 22407834
AUAAAAAAGCCCUACAA-ACAUUUCAGCAACAACAGCUCUUAAAUGGCUACGACAUCUGCCAUAUGUUUCAAUGAAUGGGCUUAAAAAUGUUUGGAGGCAACACAAAAAGUAAAAAGAAA
........(((...(((-((((((.(((.....((.....((.(((((..........))))).))......)).....)))...)))))))))..)))..................... ( -22.60)
>DroSec_CAF1 21789 120 + 1
AUAAAAAAGCCCUACAAAACAUUUCAGCAACAACAGCUCUUAAAUGGCUACGACAUCUGCCAUAUGUUUCAAUGAAUGGGCUUAAAAGUGUUUGGAGGCAACACAAAAAGUAAAAAAAAA
......((((((..((((((((...(((.......))).....(((((..........)))))))))))...))...))))))....(((((.......)))))................ ( -22.60)
>DroEre_CAF1 23580 108 + 1
AUAAAAAAGCCCUACAAAACAUUUCAGCAACAACAGCUCUUAAAUGGCUACGACAUCUGCCAUAUGUUUCAAUGAAUGGGCUUAAAAGUGUUUGGAGGCAACACAAAA------------
......((((((..((((((((...(((.......))).....(((((..........)))))))))))...))...))))))....(((((.......)))))....------------ ( -22.60)
>DroYak_CAF1 24996 107 + 1
AUAAAAAA-CCCUACAAAACAUUUCAGCAACAACAGCUCUUAAAUGGCUACGACAUCUGCCAUAUGUUUCAAUGAAUGGGCUUAAAAGUGUUUGGAGGCAACACAAAA------------
........-.(((...((((((((.(((.....((.....((.(((((..........))))).))......)).....)))...))))))))..)))..........------------ ( -17.70)
>consensus
AUAAAAAAGCCCUACAAAACAUUUCAGCAACAACAGCUCUUAAAUGGCUACGACAUCUGCCAUAUGUUUCAAUGAAUGGGCUUAAAAGUGUUUGGAGGCAACACAAAA____________
......((((((..((((((((...(((.......))).....(((((..........)))))))))))...))...)))))).......((((..(....).))))............. (-19.67 = -20.18 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:47 2006