Locus 4834

Sequence ID 2L_DroMel_CAF1
Location 13,757,970 – 13,758,088
Length 118
Max. P 0.558026
window7661

overview

Window 1

Location 13,757,970 – 13,758,088
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 92.39
Mean single sequence MFE -25.90
Consensus MFE -19.82
Energy contribution -20.30
Covariance contribution 0.48
Combinations/Pair 1.04
Mean z-score -1.60
Structure conservation index 0.77
SVM decision value 0.05
SVM RNA-class probability 0.558026
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13757970 118 - 22407834
AAGUGUAAAGCUGGCUGCGACAGCUGCAGGUAAGUGGAAUUACCUUGAUUCCGCUUAAUCACAGUCAUAACUAAUGUAAUUUUAAUUUUUAAUUUCAUUUUAACUAUCUAUGUACAUG
..(((((..((((.(((((.....))))).(((((((((((.....)))))))))))....)))).......((((.((((.........)))).)))).............))))). ( -25.30)
>DroSec_CAF1 21594 114 - 1
AAGUGUAAAGCUGGCUGCGACAGCUGCAGGUAAGUGGAAUUACCUUGAUUCCGCUUAAUCACAGUCAUAACUAAUGUAAUUUUAAUUUUUAAUUUCAUUUUAACU----ACGCACAUG
..(((((..((((.(((((.....))))).(((((((((((.....)))))))))))....)))).......((((.((((.........)))).)))).....)----))))..... ( -27.00)
>DroSim_CAF1 23692 114 - 1
AAGUGUAAAGCUGGCUGCGACAGCUGCAGGUAAGUGGAAUUACCUUGAUUCCGCUUAAUCACAGUCAUAACUAAUGUAAUUUUAAUUUUUAAUUUCAUUUUAACU----ACGCACAUG
..(((((..((((.(((((.....))))).(((((((((((.....)))))))))))....)))).......((((.((((.........)))).)))).....)----))))..... ( -27.00)
>DroEre_CAF1 23385 114 - 1
AAGUGUAAAGCUGGCUGCGACACCUGCAGGCAAGUGGAAUUACCUUGAUUACGCUUGAUCAUGGUCAUAACUAAUGUAAUUUUAAUUUUUAAUAUCAUGUUGACU----AUGUACAUG
((((((((.((((.(((((.....))))).).)))((.....))....))))))))...((((((((.........(((.........))).........)))))----)))...... ( -24.77)
>DroYak_CAF1 24801 114 - 1
AAGUGUAAAGCUGGUGGCGACAGCUUCAGGUAAGUGGAAUUACCUUGAUUCCGCUUAAUCACACUCAUAACUAAUGUAAUUUUAAUUUUUAAUUUCAUUUUAACG----ACGUACAUA
.(((((.((((((.......))))))..(((((((((((((.....)))))))))).))))))))........(((((...((((..............))))..----...))))). ( -25.44)
>consensus
AAGUGUAAAGCUGGCUGCGACAGCUGCAGGUAAGUGGAAUUACCUUGAUUCCGCUUAAUCACAGUCAUAACUAAUGUAAUUUUAAUUUUUAAUUUCAUUUUAACU____ACGUACAUG
..(((((.(((((.......)))))...(((((((((((((.....))))))))))).))....................................................))))). (-19.82 = -20.30 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:46 2006