| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,755,934 – 13,756,049 |
| Length | 115 |
| Max. P | 0.880623 |
| Location | 13,755,934 – 13,756,049 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 80.80 |
| Mean single sequence MFE | -22.38 |
| Consensus MFE | -11.50 |
| Energy contribution | -12.98 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.880623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13755934 115 + 22407834 UUUACU--CAA--AGAAAAAAGAGCUGCUGUUGGUGGAAAAUGGAAACUUUUACCAUUGGACCACAAUAACCAGCUAAAUAACAAGCUCUUGGAAAACCAGGAAAACAGCCAACUAUUU ......--...--........(.((((..((((((((((((.(....))))).))((((.....)))).))))))............((((((....))))))...)))))........ ( -25.30) >DroSec_CAF1 19526 114 + 1 UUGACU--CAA--A-AAAAAAGCGAGGCUGUUGGUGGAAAAUGGAAACUUUUACCAUUGGACCACAAUAACCAGCUAAAUAACAAGCUCUUGGAAAACCAGGACAACAGCCAACUAUUU ......--...--.-..........((((((((((((..(((((.........)))))...))))........(((........)))((((((....))))))))))))))........ ( -32.20) >DroSim_CAF1 21637 114 + 1 UUUACU--CAA--A-AAAAAAGCGAGGUUGUUGGUGGAAAAUAGAAACUUUUACCAUUGGACCACAAUAACCAGCUAAAUAACAAGCCCUUGGAAAACCAGGACAACAGCCAACUAUUU ......--...--.-..........((((((((((((....((((....))))((...)).))))........(((........))).(((((....))))).))))))))........ ( -22.50) >DroEre_CAF1 21409 104 + 1 CUUAUUACCAGAUA-AUU-------UGCUCUUGGUAA-------AAACUUGUACCAUUGGACCACCAUAACCAGCUAAAUAACAAGAUCCUGGAAACCCAGGACAACAGGCAACUAUUU ....((((((((..-...-------...)).))))))-------...(((((....((((..........)))).......))))).((((((....))))))....((....)).... ( -21.10) >DroYak_CAF1 22736 100 + 1 UUUACU--CAA--A-AAA-------AGCUCUCGGUGG-------AAACUUUUACUAUUGGACCACAAUAACAAGCUAAAUAACAACCUCUUGGAUAACCAGCACAACAGCAAACUAUUU ......--...--.-...-------.(((...((((.-------...)......(((((.....)))))...............)))..((((....))))......)))......... ( -10.80) >consensus UUUACU__CAA__A_AAAAAAG_G_GGCUGUUGGUGGAAAAU_GAAACUUUUACCAUUGGACCACAAUAACCAGCUAAAUAACAAGCUCUUGGAAAACCAGGACAACAGCCAACUAUUU ..........................(((((((((((........................))))......................((((((....)))))))))))))......... (-11.50 = -12.98 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:40 2006