Locus 483

Sequence ID 2L_DroMel_CAF1
Location 1,425,120 – 1,425,236
Length 116
Max. P 0.525810
window775

overview

Window 5

Location 1,425,120 – 1,425,236
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 91.03
Mean single sequence MFE -37.66
Consensus MFE -29.42
Energy contribution -29.30
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -1.43
Structure conservation index 0.78
SVM decision value -0.02
SVM RNA-class probability 0.525810
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1425120 116 + 22407834
AGAACGAGAUUCGUUUUAGCCAACAACCACUGUACCCAUCCGGGAAAAAGGGACAGAUUUUAGCAGUGCCGUUGGCAAUGGCAAAGGCGCUGGCGAAAUGAUCGCGUCUGAAUGGU
((((((.....)))))).((((....((.((...(((....)))....)))).(((((.....(((((((....((....))...)))))))((((.....)))))))))..)))) ( -39.00)
>DroSec_CAF1 43219 116 + 1
AGAACCAGAUUCGUUGUAGCCAUCAACCACUGUACCCAUCCGGAAAAAAGGGACAGAUUUUAGCAGUGCCGUUGGCAAUGGCAAAGGCGCUGGCGAAAUGAUCGCGUCUGAAUGGU
.....((((((((((...((((.(.....((((.(((............)))))))......((..((((((.....))))))...))).))))..)))))....)))))...... ( -34.00)
>DroSim_CAF1 43450 116 + 1
AGAACCAGAUUCGUUGUAGCCAUCAACCACUGUACCCAUCCGGGAAAAAGGGACAGAUUUUAGCAGUGCCGUUGGCAAUGGCAAAGGCGCUGGCGAAAUGAUCGCGUCUGAAUGGU
..................(((((...((.((...(((....)))....)))).(((((.....(((((((....((....))...)))))))((((.....))))))))).))))) ( -35.30)
>DroEre_CAF1 43124 116 + 1
AAAGCAGGAUUCGUCUUAGCGAUCGACCACCGUACCGAUCUGCGAAAGAGGGACAGAUUUGAGUAGUGCCGUUGGCAAUGGCAAAGGCGCUGGCGAAAUGAUCGCGUCUGAAUGGU
.........(((.((((.(((((((..........))))).))..)))).)))(((((.....(((((((....((....))...)))))))((((.....)))))))))...... ( -35.40)
>DroYak_CAF1 44209 116 + 1
AGAGCAAGGUUCGUCUUAGCGAUGAGCCACCGUACCCAACUGGGAAAGAGGGACAGAUUUGAGCAGUGCCGUUGGCAAUGGCAAAGGCGCUGGCGAAAUGAUCGCGUCUGAAUGGU
.......((((((((.....))))))))(((((.(((....))).........(((((.....(((((((....((....))...)))))))((((.....))))))))).))))) ( -44.60)
>consensus
AGAACAAGAUUCGUUUUAGCCAUCAACCACUGUACCCAUCCGGGAAAAAGGGACAGAUUUUAGCAGUGCCGUUGGCAAUGGCAAAGGCGCUGGCGAAAUGAUCGCGUCUGAAUGGU
.........................((((.....(((............))).(((((.....(((((((....((....))...)))))))((((.....)))))))))..)))) (-29.42 = -29.30 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:15 2006