Locus 4828

Sequence ID 2L_DroMel_CAF1
Location 13,751,928 – 13,752,032
Length 104
Max. P 0.542408
window7650

overview

Window 0

Location 13,751,928 – 13,752,032
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.17
Mean single sequence MFE -28.22
Consensus MFE -24.88
Energy contribution -25.38
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.27
Structure conservation index 0.88
SVM decision value 0.02
SVM RNA-class probability 0.542408
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13751928 104 - 22407834
GAUGCUGCGAAAUCCGAGACGCUCACAAAUUAUAUGUUAAUGCAAUUGUAAUUGAUACAAAUUUGAUUUCGCAAGGAGUAAAAAUGUGUUGCUCCAGCGGCUG---------C-------
..((((((((((((.(((...)))..(((((...(((((((((....)).)))))))..)))))))))))))..(((((((.......)))))))))))....---------.------- ( -27.30)
>DroSec_CAF1 15571 107 - 1
GAUGCUGCGAAAUCCGAGACGCUCACAAAUUAUAUGUUAAUGCAAUUGUAAUUGAUACAAAUUUGAUUUCGCAAGGAGUAAAAAUGUGUUGCUCCAGCGGCUG---------CGGC----
..((((((((((((.(((...)))..(((((...(((((((((....)).)))))))..)))))))))))))..(((((((.......)))))))))))....---------....---- ( -27.30)
>DroAna_CAF1 27206 116 - 1
GCUGCUGCGAAAUCCGAGGCGCUCACAAAUUAUAUGUUAAUGCAAUUGUAAUUGAUACAAAUUUGAUUUCGGAAGGAAUAAAAAUGUGUUGCCCCAGCCGCCGGCUCUGCCUCAGU----
((....)).......(((((((.((((((((((((((....)))..)))))))........(((.(((((....))))).))).))))..))...((((...))))..)))))...---- ( -28.70)
>DroSim_CAF1 17599 107 - 1
GAUGCUGCGAAAUCCGAGACGCUCACAAAUUAUAUGUUAAUGCAAUUGUAAUUGAUACAAAUUUGAUUUCGCAAGGAGUAAAAAUGUGUUGCUCCAGCGGCUG---------CGGC----
..((((((((((((.(((...)))..(((((...(((((((((....)).)))))))..)))))))))))))..(((((((.......)))))))))))....---------....---- ( -27.30)
>DroEre_CAF1 17567 111 - 1
GAUGCUGCGAAAUCCGAGACGCUCACAAAUUAUAUGUUAAUGCAAUUGUAAUUGAUACAAAUUUGAUUUCGCAAGGAGUAAAAGUGUGUUGCUCCAGCGGCUG---------CGGCUGUC
.....(((((((((.(((...)))..(((((...(((((((((....)).)))))))..)))))))))))))).(((((((.......))))))).(((((..---------..))))). ( -30.20)
>DroYak_CAF1 18675 108 - 1
GAUGCUGCGAAAUCCGAGACGCUCACAAAUUAUAUGUUAAUGCAAUUGUAAUUGAUACAAAUUUGAUUUCGCAAGGAGUAAAAAUGUGUUGCUCCAGCGGCUG---------CGGCU---
...(((((((((((.(((...)))..(((((...(((((((((....)).)))))))..)))))))))))))..(((((((.......))))))))))(((..---------..)))--- ( -28.50)
>consensus
GAUGCUGCGAAAUCCGAGACGCUCACAAAUUAUAUGUUAAUGCAAUUGUAAUUGAUACAAAUUUGAUUUCGCAAGGAGUAAAAAUGUGUUGCUCCAGCGGCUG_________CGGC____
...(((((((((((.(((...)))..(((((...(((((((((....)).)))))))..)))))))))))....(((((((.......))))))).)))))................... (-24.88 = -25.38 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:36 2006