Locus 4824

Sequence ID 2L_DroMel_CAF1
Location 13,747,600 – 13,747,709
Length 109
Max. P 0.997807
window7636 window7637

overview

Window 6

Location 13,747,600 – 13,747,709
Length 109
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 75.30
Mean single sequence MFE -22.60
Consensus MFE -14.80
Energy contribution -15.12
Covariance contribution 0.32
Combinations/Pair 1.09
Mean z-score -2.41
Structure conservation index 0.65
SVM decision value 2.56
SVM RNA-class probability 0.995243
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13747600 109 + 22407834
GUUGGGAUACAAAAUCAGCUAGUUAAGUAGGUCAUACAAUGCGACACUUUUAUAUCAAAUCGCCCUUUGUAUCCACUACUUAAAUAUAUAAUUUCUAAUUAAUUCCGAU----------
((((((((..............((((((((...((((((.((((...............))))...))))))...)))))))).....((((.....))))))))))))---------- ( -21.26)
>DroSec_CAF1 11257 119 + 1
GUUGGAAUACAAAAUCAGCUAGUUAAGUAGGCCAUACAAUGCGAUACUUUUAUAUCAAAUCGCCUUUUGUAUCCACUACUUAAAUAUAUAAUUUCUAAAUAUUUCCGAUUAUUAUUAUA
(((((((....((((.......((((((((...((((((.(((((.............)))))...))))))...)))))))).......))))........))))))).......... ( -21.76)
>DroAna_CAF1 23127 104 + 1
GCUUGCA---AAAAUCAACUAGUUAUGUAGGCUAUACAUUGCGAGUAUAUUUUAUUUAGUCGCCC-AUGUAUUGCCUACUUAAACACAUGAUUUAG--UUUGCACAGAU---------A
.((((((---(((((((.....(((.((((((.((((((.((((.((.........)).))))..-)))))).)))))).))).....)))))...--)))))).))..---------. ( -31.10)
>DroSim_CAF1 12974 119 + 1
GUUGGAAUACAAAAUCAGCUAGUUAAGUAGGCCAUACAAUGCGAUACUUUUAUAUCAAAUCGCCUUUUGUAUCCACUACUUAAAUAUAUAAUUUCUAAAUAUUUCCGAUUAUUAUUAUA
(((((((....((((.......((((((((...((((((.(((((.............)))))...))))))...)))))))).......))))........))))))).......... ( -21.76)
>DroEre_CAF1 13082 101 + 1
GUUGGGAUACAAAAUCAGCUAGUUAAGCAGGUCAUACAAUGCGACAUUUUUAUACCAAAUCGCCGUUUGUAUCCACUACUUAGAUAUAUAAUUUUGAUCAA------------------
.....(((.((((((.......(((((.((...((((((.((((...............))))...))))))...)).))))).......)))))))))..------------------ ( -17.10)
>consensus
GUUGGAAUACAAAAUCAGCUAGUUAAGUAGGCCAUACAAUGCGACACUUUUAUAUCAAAUCGCCCUUUGUAUCCACUACUUAAAUAUAUAAUUUCUAAAUAUUUCCGAU_________A
(((((.........)))))...((((((((...((((((.((((...............))))...))))))...)))))))).................................... (-14.80 = -15.12 +   0.32)

alignment

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secondary structure

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dotplot

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Window 7

Location 13,747,600 – 13,747,709
Length 109
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 75.30
Mean single sequence MFE -25.70
Consensus MFE -20.42
Energy contribution -20.14
Covariance contribution -0.28
Combinations/Pair 1.21
Mean z-score -2.50
Structure conservation index 0.79
SVM decision value 2.94
SVM RNA-class probability 0.997807
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13747600 109 - 22407834
----------AUCGGAAUUAAUUAGAAAUUAUAUAUUUAAGUAGUGGAUACAAAGGGCGAUUUGAUAUAAAAGUGUCGCAUUGUAUGACCUACUUAACUAGCUGAUUUUGUAUCCCAAC
----------...(((..((....(((((((..((.((((((((.(.((((((...(((((.............))))).))))))..))))))))).))..))))))).))))).... ( -23.32)
>DroSec_CAF1 11257 119 - 1
UAUAAUAAUAAUCGGAAAUAUUUAGAAAUUAUAUAUUUAAGUAGUGGAUACAAAAGGCGAUUUGAUAUAAAAGUAUCGCAUUGUAUGGCCUACUUAACUAGCUGAUUUUGUAUUCCAAC
.............((((.(((...(((((((..((.((((((((...((((((...(((((.............))))).))))))...)))))))).))..))))))))))))))... ( -25.02)
>DroAna_CAF1 23127 104 - 1
U---------AUCUGUGCAAA--CUAAAUCAUGUGUUUAAGUAGGCAAUACAU-GGGCGACUAAAUAAAAUAUACUCGCAAUGUAUAGCCUACAUAACUAGUUGAUUUU---UGCAAGC
.---------.....((((((--...(((((...(((...((((((.((((((-..((((.((.........)).)))).)))))).))))))..)))....)))))))---))))... ( -30.50)
>DroSim_CAF1 12974 119 - 1
UAUAAUAAUAAUCGGAAAUAUUUAGAAAUUAUAUAUUUAAGUAGUGGAUACAAAAGGCGAUUUGAUAUAAAAGUAUCGCAUUGUAUGGCCUACUUAACUAGCUGAUUUUGUAUUCCAAC
.............((((.(((...(((((((..((.((((((((...((((((...(((((.............))))).))))))...)))))))).))..))))))))))))))... ( -25.02)
>DroEre_CAF1 13082 101 - 1
------------------UUGAUCAAAAUUAUAUAUCUAAGUAGUGGAUACAAACGGCGAUUUGGUAUAAAAAUGUCGCAUUGUAUGACCUGCUUAACUAGCUGAUUUUGUAUCCCAAC
------------------..(((((((((((..((..(((((((.(.((((((...(((((.............))))).))))))..))))))))..))..)))))))).)))..... ( -24.62)
>consensus
U_________AUCGGAAAUAAUUAGAAAUUAUAUAUUUAAGUAGUGGAUACAAAAGGCGAUUUGAUAUAAAAGUAUCGCAUUGUAUGGCCUACUUAACUAGCUGAUUUUGUAUCCCAAC
........................(((((((..((.((((((((...((((((...(((((.............))))).))))))...)))))))).))..))))))).......... (-20.42 = -20.14 +  -0.28)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:22 2006