Locus 4822

Sequence ID 2L_DroMel_CAF1
Location 13,745,987 – 13,746,087
Length 100
Max. P 0.631463
window7633

overview

Window 3

Location 13,745,987 – 13,746,087
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.36
Mean single sequence MFE -22.18
Consensus MFE -15.09
Energy contribution -15.87
Covariance contribution 0.78
Combinations/Pair 1.15
Mean z-score -1.31
Structure conservation index 0.68
SVM decision value 0.20
SVM RNA-class probability 0.631463
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13745987 100 + 22407834
-----CCCACACCCACAAACG---------------CUGCUCCAUCGUUGUCCGUAUUUGGACAAGCCAUCAUCAAGAUGUUUCGAGUCAUUGAAACAAAGGCCAAGUCGAGUCAAUCAA
-----................---------------..((((.....(((((((....)))))))((((((.....)))(((((((....)))))))...)))......))))....... ( -22.80)
>DroSec_CAF1 9576 100 + 1
-----CCCACACCCACGAACA---------------CUGCUCCAUCGUUGUCCGUAUUUGGACAAGCCAUCAUCAAGAUGUUUCGAGUCAUUGAAACAAAGGCCAAGUCGAGUCAAUCAA
-----................---------------..((((.....(((((((....)))))))((((((.....)))(((((((....)))))))...)))......))))....... ( -22.80)
>DroAna_CAF1 21615 120 + 1
CUGCCCUCCCACCCCGACACAGUUAUAUGCCCCCGACAUCUAUGUCGUUGUCUGUGUUUGGACAAGUUAUCGUCAAGAUGUUUCGAGUCAUUGAAACAAAGGCCAGGCCAAGUCAAUCAA
..(((...((..((.(((((((......((...(((((....)))))..))))))))).)).................((((((((....))))))))..))...)))............ ( -28.10)
>DroSim_CAF1 11293 100 + 1
-----CCCACACCCACGAACA---------------CUGCUCCAUCGUUGUCCGUAUUUGGACAAGCCAUCAUCAAGAUGUUUCGAGUCAUUGAAACAGAGGCCAAGUCGAGUCAAUCAA
-----................---------------..((((.....(((((((....)))))))((((((.....)))(((((((....)))))))...)))......))))....... ( -22.80)
>DroEre_CAF1 11215 79 + 1
-----CCCACACC-------A---------------UUGC--------------UAUUUGGACAAGCCAUCAUCAAGAUGUUUCGAGUCAUUGAAACAAAGGCCAAGUCGAGUCAAUCAA
-----........-------(---------------(((.--------------.((((((....((((((.....)))(((((((....)))))))...)))....))))))))))... ( -15.20)
>DroYak_CAF1 12234 94 + 1
-----CCCACACCC------A---------------UUCCUCCAUCGUUGUCCGUAUUUGGACAAGCCAUCAUCAAGAUGUUUCGAGUCAUUGAAACAAAGGCCAAGUCGAGUCAAUCAA
-----.........------.---------------...(((.....(((((((....)))))))((((((.....)))(((((((....)))))))...)))......)))........ ( -21.40)
>consensus
_____CCCACACCCAC_AACA_______________CUGCUCCAUCGUUGUCCGUAUUUGGACAAGCCAUCAUCAAGAUGUUUCGAGUCAUUGAAACAAAGGCCAAGUCGAGUCAAUCAA
...............................................(((((((....)))))))((((((.....)))(((((((....)))))))...)))................. (-15.09 = -15.87 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:19 2006