Locus 4813

Sequence ID 2L_DroMel_CAF1
Location 13,737,512 – 13,737,629
Length 117
Max. P 0.543978
window7611

overview

Window 1

Location 13,737,512 – 13,737,629
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.63
Mean single sequence MFE -36.30
Consensus MFE -22.76
Energy contribution -23.48
Covariance contribution 0.73
Combinations/Pair 1.26
Mean z-score -1.67
Structure conservation index 0.63
SVM decision value 0.02
SVM RNA-class probability 0.543978
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13737512 117 + 22407834
CUUGGUCUUGGUCCUGGCCGUGCCCCUCAUACACUCUGCCAAACUUCCUUGGCUUUGUGCUGCAGUCGUGGCG---AAAGUUUUGCGGCCGCCGUCAAGUUUGUAUCCAUUCCGAGACUA
..(((((((((...((((.(((.........)))...)))).((...((((((..((.(((((((....(((.---...))))))))))))..))))))...)).......))))))))) ( -37.70)
>DroSec_CAF1 1356 111 + 1
------CUUGGUCCUGGCCGUGCCCCUCAUACACUCUGCCAAACUUCCUUGGCUUUGUGCUGCAGUCUUGGCG---AAAGUUUUGCGGCCGCCGCCAAGUUUGUAUCCAUUCCGAGAUUA
------(((((...((((.(((.........)))...)))).((...((((((..((.(((((((....(((.---...))))))))))))..))))))...)).......))))).... ( -34.10)
>DroAna_CAF1 13388 103 + 1
------CUCGGCCAGGAUUUUGCAC----UACACUCCGGCAAAGUUCCUUGCCAUCCA----GAAUGGAGACGGACGAAGUUUUGCGGCCACCG---AGCUAAGGUCUAUUUUUGGAUUA
------...(((.((((((((((.(----........))))))).)))).)))(((((----(((.(....)((((..(((....(((...)))---.)))...))))..)))))))).. ( -30.90)
>DroSim_CAF1 3005 111 + 1
------CUUGGUCCUGGCCGUGCCCCUCAUACACUCUGCCAAACUUCCUUGGCUUUGUGCUGCAGUCGUGGCG---AAAGUUUUGCGGCCGCCGCCAAGUUUGUAUCCAUUCCGAGAUUA
------((((((..(((((((((..((((..(((...(((((......)))))...))).)).))..))(((.---...)))..)))))))..))))))..................... ( -34.10)
>DroEre_CAF1 2896 110 + 1
------CUUGGUCCUGGCCGUGCC-UUCAUACACUCUGCCAAACUUCCUUGGCUUUGUGCUGAAGUCGAGGCG---AAAGUUUUGCGGCCGCCGCCAAGUUUGUAUCCAUUCCGGGAUUA
------((((((..((((((((.(-((((..(((...(((((......)))))...))).))))).)(((((.---...))))))))))))..)))))).....((((......)))).. ( -42.70)
>DroYak_CAF1 2809 110 + 1
------CUUGGUCCUGGCCGUGCC-UUCAUACACUCUGCCAAACUUCCUUGGCUUUGUGCUGCAGUCGAGGCG---AAAGUUUUGCGGCCGCCGCCAAGUUUCUAUCCAUUCCGGGAUUA
------((((((..((((((((.(-(.((..(((...(((((......)))))...))).)).)).)(((((.---...))))))))))))..)))))).....((((......)))).. ( -38.30)
>consensus
______CUUGGUCCUGGCCGUGCCCCUCAUACACUCUGCCAAACUUCCUUGGCUUUGUGCUGCAGUCGAGGCG___AAAGUUUUGCGGCCGCCGCCAAGUUUGUAUCCAUUCCGAGAUUA
......((((((..(((((((..........(((...(((((......)))))...))).....((....))............)))))))..))))))..................... (-22.76 = -23.48 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:58 2006