Locus 4812

Sequence ID 2L_DroMel_CAF1
Location 13,735,383 – 13,735,495
Length 112
Max. P 0.551167
window7610

overview

Window 0

Location 13,735,383 – 13,735,495
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 72.38
Mean single sequence MFE -24.72
Consensus MFE -9.22
Energy contribution -10.26
Covariance contribution 1.04
Combinations/Pair 1.28
Mean z-score -1.71
Structure conservation index 0.37
SVM decision value 0.03
SVM RNA-class probability 0.551167
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13735383 112 + 22407834
UAAACCGCUUCAAGCUGUUUGCUCUGCACUUUUUAAUAGUCGCAGAUUGUACUCCAUACUGAGAUCACUGUGACAAAU-------GUAAUGUAUUUUGCAAAAUAAAUAUAUAG-GUAUU
...(((((....(((.....)))..))...........(((((((..((..(((......)))..)))))))))....-------...((((((((........)))))))).)-))... ( -22.40)
>DroAna_CAF1 3872 110 + 1
UAAAACGCCGCCAGAUGUUUGCGCUGCAGUUUUUAAUAGUCGUGGAUUGGAGUUAGUUUUACCUUCAGUG--AAAAAU-------AUUAAUUCUUU-AAUCCAUAGAGUUAUAAUUUAUU
.(((((((.(((((....))).)).)).)))))..(((((((((((((((((((((((((((.....)))--))....-------)))))))))..-))))))).)).))))........ ( -22.00)
>DroSim_CAF1 944 111 + 1
UAAACCGCUUCAAGCUGUUUGCUCUGCACUUUUUAAUAGUCGCAGAUUGUACUCCAUACUGAGAUCACUGUGA-AAAU-------CGAAUGUAUUUUGAAAAAUAAGUAUAUAU-GUAUU
(((((.((.....)).))))).((((((((.......))).))))).((((((.((((.((....)).)))).-...(-------((((.....)))))......))))))...-..... ( -20.30)
>DroEre_CAF1 813 99 + 1
UAAACCGCUUCAAGCUGUUUGCUCUGCACUUUUUAAUAGUCGCGGAUUGUACUCCGUACUGAGUUCACUGCGACAAAU-------GAAGUGUAUUU-------------GAAAG-GUAUU
...(((..(((((((.....))..((((((((......(((((((..((.((((......)))).)))))))))....-------)))))))).))-------------))).)-))... ( -30.50)
>DroYak_CAF1 636 106 + 1
UAAACCGCUUCAAGCUGUUUGCUCUGCACUUUUUAAUAGUCGCGGAUUGUACACCAUACUGAGUUCACUGUGACAAAAACUGUUAAAAAUGAAUUC-------------AAUGG-GUAUU
(((((.((.....)).))))).((((((((.......))).)))))..((((.((((..((((((((...(((((.....)))))....)))))))-------------)))))-)))). ( -28.40)
>consensus
UAAACCGCUUCAAGCUGUUUGCUCUGCACUUUUUAAUAGUCGCGGAUUGUACUCCAUACUGAGUUCACUGUGACAAAU_______AAAAUGUAUUU______AUA____UAUAG_GUAUU
......((....(((.....)))..))...........(((((((..((.((((......)))).))))))))).............................................. ( -9.22 = -10.26 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:57 2006