| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,728,944 – 13,729,045 |
| Length | 101 |
| Max. P | 0.604688 |
| Location | 13,728,944 – 13,729,045 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.13 |
| Mean single sequence MFE | -18.37 |
| Consensus MFE | -14.29 |
| Energy contribution | -14.15 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13728944 101 - 22407834 GAGGAAAAAUAUUAAAGAUUCUG------G--AAACCAUAAUCUUAUUGACGUGAUAGGAUUACACUUUGCUAAGUGAAUUAAUAAAGUAUCCUGUCAA-------GGGG----GUUGGG ..............((((((.((------(--...))).)))))).(..((.(((((((((...((((((.(((.....))).))))))))))))))).-------....----))..). ( -22.70) >DroVir_CAF1 127152 100 - 1 CAAGAAAAAUAUUAAAGAUUCUC------A--AAACCAUAAUCUUAUUGACGUGAUAGGAUUACACUUUGCUAAGUGAAUUAAUAAAGUAUGCG----U-------CGCCG-AUGUUGAU .........((((((........------.--......((((((((((.....))))))))))(((((....)))))..))))))......(((----(-------(...)-)))).... ( -15.50) >DroGri_CAF1 140987 88 - 1 CAAGAAAAAUAUUAAAGAUUCUC------A--AAACCAUAAUCUUAUUGACGUGAUAGGAUUACACUUUGCUAAGUGAAUUAAUAAAGUAUGCG----U--------------------U .........((((((........------.--......((((((((((.....))))))))))(((((....)))))..)))))).........----.--------------------. ( -13.70) >DroWil_CAF1 246557 96 - 1 CAAGAAAAAUAUUAAAGAUUCUC------GAAAAACCAUAAUCUUAUUGACGUGAUAGGAUUACACUUUGCUAAGUGAAUUAAUAAAGUAUGCAGGAUG-------GUG----------- .......................------.....((((((((((((((.....))))))))).(((((....)))))...................)))-------)).----------- ( -15.60) >DroMoj_CAF1 146122 103 - 1 CAAGAAAAAUAUUAAAGAUUCUCUCUCUUA--AAACCAUAAUCCUAUUGACGUGAUAGGAUUACACUUUGCUAAGUGAAUUAAUAAAGUGUGUGAGCAU-------CGCAU--------C ................(((.(((.(.....--.......(((((((((.....)))))))))((((((((.(((.....))).))))))))).))).))-------)....--------. ( -22.50) >DroAna_CAF1 95767 112 - 1 CAAGAAAAAUAUUAAAGAUUCCG------A--AAACCAUAAUCUUAUUGACGUGAUAGGAUUACACUUUGCUAAGUGAAUUAAUAAAGUAUGCGAGCUGGAUAGGGAGCGACGAGUUUGG .........((((((........------.--......((((((((((.....))))))))))(((((....)))))..)))))).......((((((.(...(....)..).)))))). ( -20.20) >consensus CAAGAAAAAUAUUAAAGAUUCUC______A__AAACCAUAAUCUUAUUGACGUGAUAGGAUUACACUUUGCUAAGUGAAUUAAUAAAGUAUGCG_GC_U_______CGC__________G .........((((((.......................((((((((((.....))))))))))(((((....)))))..))))))................................... (-14.29 = -14.15 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:47 2006