Locus 4807

Sequence ID 2L_DroMel_CAF1
Location 13,727,117 – 13,727,212
Length 95
Max. P 0.983849
window7603

overview

Window 3

Location 13,727,117 – 13,727,212
Length 95
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 80.88
Mean single sequence MFE -33.42
Consensus MFE -22.41
Energy contribution -23.09
Covariance contribution 0.69
Combinations/Pair 1.04
Mean z-score -2.58
Structure conservation index 0.67
SVM decision value 1.96
SVM RNA-class probability 0.983849
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13727117 95 + 22407834
GGGCACGUUGGCGGAGAGAGGAAACGAUGGCGAAGGCGAGGUAAAGGCCUCGAGUGCCGCAAGAGCACUUAAUACUAAUUAGCUUUGCGCCUACG
.....(((.((((.((((.(....)....((....))(((((....)))))(((((((....).))))))............)))).)))).))) ( -37.30)
>DroSec_CAF1 84371 95 + 1
GGGCAUAGUGGUGCAGAGAGGGGACAAGGGCGAAGGCGAGGGAAAGGCCUCGAGUGCCGCAAGAGCACUUAAUACUAAUUAGCUUUGCGCCUACG
.......(((((((((((.(....)..((((....))((((......))))(((((((....).))))))....))......))))))))).)). ( -37.00)
>DroSim_CAF1 82195 95 + 1
GGGCAUGGUGGUGGAGAGAGGUGACGAGGGCGAAGGCACGGGAAAGGCCUCGAGUGCCGCAAGAGCACUUAAUACUAAUUAGCUUUGCGCCUACG
(((((.(((..(((...(((((..((...((....)).))......)))))(((((((....).))))))....)))....))).))).)).... ( -32.00)
>DroEre_CAF1 84726 73 + 1
GGGCAUGGUUG---AGGGA--G-----------------AGGAAUGGCCUCGAGUGCCGCAAGAGCACUUAAUACUAAUUAGCUUUGCGCCUACG
(((((.(((((---(....--(-----------------(((.....))))(((((((....).))))))........)))))).))).)).... ( -27.40)
>consensus
GGGCAUGGUGGUGGAGAGAGGGGACGAGGGCGAAGGCGAGGGAAAGGCCUCGAGUGCCGCAAGAGCACUUAAUACUAAUUAGCUUUGCGCCUACG
(((((.(((.....((.((((........((....))..........))))(((((((....).))))))....)).....))).))).)).... (-22.41 = -23.09 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:46 2006