Locus 4804

Sequence ID 2L_DroMel_CAF1
Location 13,710,151 – 13,710,254
Length 103
Max. P 0.521546
window7600

overview

Window 0

Location 13,710,151 – 13,710,254
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 83.88
Mean single sequence MFE -28.63
Consensus MFE -18.34
Energy contribution -18.07
Covariance contribution -0.27
Combinations/Pair 1.35
Mean z-score -2.32
Structure conservation index 0.64
SVM decision value -0.02
SVM RNA-class probability 0.521546
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13710151 103 - 22407834
UGCUCCUGGGUUGGACUAUUGAUCCCAGACCCAUUUGGCGCACCAGAAACUCCUGGGCCGCCACCAUCUGCUCCUUUUGCUCUUCCUCAUCCCAACCAUUCUC
........((((((.....................(((((..((((......))))..)))))......((.......))...........))))))...... ( -25.80)
>DroSec_CAF1 67629 103 - 1
UGCUCCUAGGUUGGACUAUUGAUCCCAGACCCAUUUGGCGCACCAGAAAUUCCUGGGCCGCCACCAUCUGCUCCUUUUGCUCAUCCUCAUCCCAACCCUUUUC
........((((((.....................(((((..((((......))))..)))))......((.......))...........))))))...... ( -25.10)
>DroSim_CAF1 65465 103 - 1
UGCUCCUGGGUUGGACUAUUGAUCCCAGACCCAUUUGGCGCACCAGAAACUCCUGGGCCGCCACCAUCUGCUCCUUUUGCUCAUCCUCAUCCCAACCCUUUUC
.......(((((((.....................(((((..((((......))))..)))))......((.......))...........)))))))..... ( -28.60)
>DroEre_CAF1 66754 103 - 1
UGCUCCGCGGUUGGACUAUUGAGCCUAGACCCAUCUGGCGCACCAGAAACUCCUGGGCCGCCAUCAUCUGUUGCCUUUGUUGCUCCUCGUCCCAAUCCUUCUC
........((((((((....((((..(((....)))((((..((((......))))..))))...................))))...)).))))))...... ( -26.10)
>DroYak_CAF1 67829 103 - 1
UGCUCCUGGGUUGGACUAUUGAGCCCAGACCCAUCUGACGCACCAGAAACUCCUGGGCCGCCUGCAUCUGCUUCUGCUGCUGUUCCUCCUCCCAACCCUUCUC
.......(((((((......(.((((((.....((((......)))).....)))))))((..(((........))).))...........)))))))..... ( -31.80)
>DroAna_CAF1 72598 103 - 1
UGCUCUUGGGGCGCACUAUGGACCCGAGACCCAUCUGGCGCACCAGGAAUUCUUGGGCCUUUAGCAACUCCUGCGUGGCCUGCUCCUCCUGCCACUCCUUCUC
.((....((((((..((((((.(((((((....(((((....)))))...)))))))))....(((.....)))))))..))))))....))........... ( -34.40)
>consensus
UGCUCCUGGGUUGGACUAUUGAUCCCAGACCCAUCUGGCGCACCAGAAACUCCUGGGCCGCCACCAUCUGCUCCUUUUGCUCAUCCUCAUCCCAACCCUUCUC
........((((((.(....)....((((......(((((..((((......))))..)))))...)))).....................))))))...... (-18.34 = -18.07 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:43 2006