Locus 4802

Sequence ID 2L_DroMel_CAF1
Location 13,706,711 – 13,706,804
Length 93
Max. P 0.920498
window7598

overview

Window 8

Location 13,706,711 – 13,706,804
Length 93
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 77.34
Mean single sequence MFE -34.67
Consensus MFE -20.81
Energy contribution -21.17
Covariance contribution 0.36
Combinations/Pair 1.10
Mean z-score -2.02
Structure conservation index 0.60
SVM decision value 1.13
SVM RNA-class probability 0.920498
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13706711 93 + 22407834
---------GGGUGGGUGGACCAGCUGGUA-------A-----GGUGAGCAGGAAACAACAAGGCCACGCCGUAUCCCGCCGAAUGUGUUGAGGCACUUUGGCGAGGUAACGAA
---------....((((((.((.(((.(..-------.-----..).))).(....).....)))))).))((..(((((((((.((((....))))))))))).))..))... ( -34.30)
>DroPse_CAF1 75319 104 + 1
---------CGGAAGGUGGGGCAGGAGAUAUGUGGCAGGAGGAAGCAGGCAGGAAGCAACAAGGCCACGCCAUACCGCGCC-AAUGUGUUGAGGCACUUUGGCGAGGUAACGAA
---------((...((((.(((........(((..(.....)..))).((.....))......))).)))).((((.((((-((.((((....)))).)))))).)))).)).. ( -35.80)
>DroEre_CAF1 63255 95 + 1
-------GAAGGCGGGUGGACCAGCUGGUA-------A-----GGUGAGCAGGAAACAACAAGGCCACGCCGCAUCCCGCCGAAUGUGUUGAGGCACUUUGGCGAGGUAACGAA
-------....((((((((.((.(((.(..-------.-----..).))).(....).....)))))).))))..(((((((((.((((....))))))))))).))....... ( -38.70)
>DroYak_CAF1 64295 102 + 1
GUGGGUGGAAGGUGGGUGGAGCAGCUGGUA-------A-----GGUGAGCAGGAAACAACAAGGCCACGCCGCAUCCCGCCGAAUGUGUUGAGGCACUUUGGCGAGGUAACGAA
((((((((....((....(..((.((....-------)-----).))..).(....)..))...)))).))))..(((((((((.((((....))))))))))).))....... ( -36.10)
>DroAna_CAF1 69129 91 + 1
---------AACACAGUGG---AGAGGGUA-------A----AGGCAGCCAGGAAGCAACAAGGCCACGCCGUAUCCCGCCAAAUGUGUUGAGGCACUUUGGCGAGGUAACGAA
---------......((((---....(((.-------.----.....))).(....).......))))..(((..(((((((((.((((....))))))))))).))..))).. ( -27.30)
>DroPer_CAF1 76004 104 + 1
---------CGGAAGGUGGGGCAGGAGAUAUGUGGCAGGAGGAAGCAGGCAGGAAGCAACAAGGCCACGCCAUACCGCGCC-AAUGUGUUGAGGCACUUUGGCGAGGUAACGAA
---------((...((((.(((........(((..(.....)..))).((.....))......))).)))).((((.((((-((.((((....)))).)))))).)))).)).. ( -35.80)
>consensus
_________AGGAGGGUGGAGCAGCUGGUA_______A_____GGCAAGCAGGAAACAACAAGGCCACGCCGUAUCCCGCCGAAUGUGUUGAGGCACUUUGGCGAGGUAACGAA
...............((((.........................(....).(....).......))))....((((.(((((((.((((....))))))))))).))))..... (-20.81 = -21.17 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:41 2006