| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 208,555 – 208,647 |
| Length | 92 |
| Max. P | 0.546449 |
| Location | 208,555 – 208,647 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 75.20 |
| Mean single sequence MFE | -23.03 |
| Consensus MFE | -14.93 |
| Energy contribution | -14.85 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.546449 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 208555 92 + 22407834 CCAGGACGAAAAAAUAGUUAACAACUUGCCCGAUCGCCAGCGGGUGGAGAGAGGUGGGUUGAUAUUAAUUCU-----UAAAAGAGAGUUCUUGACAC--------------- .(((((...............(((((..(((..(((((....)))))...).))..)))))......(((((-----(....)))))))))))....--------------- ( -25.00) >DroGri_CAF1 854 77 + 1 CCAGGACGAGAAGAUAGUUAACAAUUUGCCAGCGCGACAGAGUGUGCAUCGUGGUAAGUAGAUUUGAUC--------UAAGAGAA--------------------------- ...........((((........(((((((((((((......)))))....)))))))).......)))--------).......--------------------------- ( -13.66) >DroSec_CAF1 848 92 + 1 CCAGGACGAAAAAAUAGUUAACAACUUGCCUGAUCGCCAGCGGGUGGAGAGAGGUGGGUUGAUAUUAAUUCU-----UAAAAGAGAGUUCUUGCCAC--------------- ...((.(((............(((((..(((..((.(((.....))).)).)))..))))).....((((((-----(....))))))).)))))..--------------- ( -25.10) >DroSim_CAF1 430 92 + 1 CCAGGACGAAAAAAUAGUUAACAACUUGCCUGAUCGCCAGCGGGUGGAGAGAGGUGGGUUGAUAUUAAUUCU-----UAAAAGAGAGUUCUUGACAC--------------- .(((((...............(((((..(((..((.(((.....))).)).)))..)))))......(((((-----(....)))))))))))....--------------- ( -25.20) >DroEre_CAF1 848 111 + 1 UCAGGACGAAAAAAUAGUUAACAACUUGCCUGAUCGCCAGCGGGUGGAGAGAGGUGGGUUGAUAUUAAUUCUUAUCUUAAAAGAGA-GUCUCGACUCGAUGUUAUAUUUGAG ((..((((((..((((.....(((((..(((..((.(((.....))).)).)))..))))).))))..)))...((((....))))-)))..))(((((........))))) ( -28.40) >DroYak_CAF1 847 91 + 1 CCAGGACGAAAAAAUAGUUAACAACUUGCCUGAUCGCCAGCGGGUGGAGAGAGGUGGGUCGAUAUUA------------AAAGAGAAAUCUUGACUCCAUUUU--------- ...(((...............(.(((..(((..((.(((.....))).)).)))..))).)......------------.((((....))))...))).....--------- ( -20.80) >consensus CCAGGACGAAAAAAUAGUUAACAACUUGCCUGAUCGCCAGCGGGUGGAGAGAGGUGGGUUGAUAUUAAUUCU_____UAAAAGAGAGUUCUUGACAC_______________ .....................((((((((((..(((((....)))))....))))))))))................................................... (-14.93 = -14.85 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:09 2006