Locus 4799

Sequence ID 2L_DroMel_CAF1
Location 13,699,794 – 13,699,892
Length 98
Max. P 0.630282
window7592

overview

Window 2

Location 13,699,794 – 13,699,892
Length 98
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 81.83
Mean single sequence MFE -28.71
Consensus MFE -16.98
Energy contribution -16.84
Covariance contribution -0.13
Combinations/Pair 1.33
Mean z-score -2.13
Structure conservation index 0.59
SVM decision value 0.20
SVM RNA-class probability 0.630282
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13699794 98 + 22407834
AUGAAACUUUAUCCCUGGAGUGCUAAAUGUCUGGCCAGAUGGCCAAGCUCGACCAAAAGUCCAAGCAUUUU----GGGCACUUUCCCCAACUAUGUUUC--GGU
.((((((.........(((((((.....(..(((((....)))))..)....((((((((....)).))))----)))))))))..........)))))--).. ( -28.91)
>DroSec_CAF1 56152 98 + 1
AUGAAACUUUAUCCCUGGAGUGCUAAAUGUCUGGCCAGAUGGCCAAGCUCGAGCAAAAGUCCGAGUAUUUU----GGGCACUUUCCCCAACUAUGUUUC--GGU
.((((((.........((((((((.......(((((....))))).(((((..(....)..))))).....----.))))))))..........)))))--).. ( -30.91)
>DroSim_CAF1 54548 98 + 1
AUGAAACUUUAUCCCUGGAGUGCUAAAUGUCUGGCCAGAUGGCCAAGCUCGAGCAAAAGUCCAAGCAUUUU----GGGCACUUUCCCCAACUAUGUUUC--GGU
.((((((.........((((((((....(..(((((....)))))..)...))))...(((((((...)))----))))...))))........)))))--).. ( -30.13)
>DroEre_CAF1 56464 95 + 1
AUGAAACUUUAUCCCCGGAGUGCUAAAUGUCUGGCCAGAUGGCCGGGCUCUAGCA--GGCACCAGCGAUU-----GUGCACUUUCCCCAACUUUGUUUC--GGU
.((((((.........(((((((((...((((((((....))))))))..)))))--.((((........-----))))...))))........)))))--).. ( -32.93)
>DroYak_CAF1 57221 97 + 1
AUGAAACUUUAUCCCCGGAGUGCUAAAUGUCUGGCCAGAUGGCCAAGCUCUACCAAAAGUCCCAGCAUUC-----UUGCACUUUACCCAACUAUGUUUC--GGU
.((((((.........(((((((..(((((.(((((....))))).(((........)))....))))).-----..)))))))..........)))))--).. ( -23.71)
>DroAna_CAF1 62578 97 + 1
AUGAAACUUUAUCCCCGGAGUGGAAAAGGUCUAGCCAUCUGGCCAAACUCC-------GUCCAAACAUCUGGUUCUAGGUUUCUCCCUAAAUAUUUUUCUAGGU
..(((((((.....(((((.((((...((....(((....)))......))-------.))))....)))))....)))))))..((((..........)))). ( -25.70)
>consensus
AUGAAACUUUAUCCCCGGAGUGCUAAAUGUCUGGCCAGAUGGCCAAGCUCGAGCAAAAGUCCAAGCAUUUU____GGGCACUUUCCCCAACUAUGUUUC__GGU
..(((((.........(((((((.....((.(((((....))))).))..........((....))...........)))))))..........)))))..... (-16.98 = -16.84 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:35 2006