Locus 4796

Sequence ID 2L_DroMel_CAF1
Location 13,688,436 – 13,688,538
Length 102
Max. P 0.700876
window7587

overview

Window 7

Location 13,688,436 – 13,688,538
Length 102
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 73.00
Mean single sequence MFE -16.89
Consensus MFE -1.30
Energy contribution -1.54
Covariance contribution 0.24
Combinations/Pair 1.27
Mean z-score -1.54
Structure conservation index 0.08
SVM decision value 0.35
SVM RNA-class probability 0.700876
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13688436 102 + 22407834
UUUUGAUGCAGCCUAGAGUGUGUCAUUCACAUAUUCGAACAA------------ACAAUACUAGUUACAUUUAGCCU--GCUCCACUUGAGUACAUUUCCACAAUCACCACUCAUC
...((..((((.(((((((((((.....)))))))).....(------------((.......))).....))).))--))..))..(((((.................))))).. ( -17.53)
>DroSec_CAF1 44602 102 + 1
UUUUGAUGCAGCCUAGAGU--GUCAUUCACAUAUUCGAACAA------------ACAAUCCUAGUUACAUUUAGCCUGUGCUCCACUUGAGUACAUUUCCACAAUCAUCACUCAUC
...(((((....((((..(--((..(((........)))...------------)))...))))............(((((((.....)))))))..........)))))...... ( -15.80)
>DroSim_CAF1 43090 102 + 1
UUUUGAUGCAGCCUAGAGU--GUCAUUCACAUAUUCGAACAA------------ACAAUACUAGGUACAUAUAGCCUGUGCUCCACUUGAGUACAUUUCCACAAUCAUCACUCAUC
...(((((..((((((..(--((..(((........)))...------------)))...))))))..........(((((((.....)))))))..........)))))...... ( -21.20)
>DroEre_CAF1 45110 95 + 1
UUUUGAAGUAGUGUUGAGU--GCUAUUCACGAAUUCAUUCACAA----------GUCAUACUAGUUACAUUUCCUCU--CAUCCUCUUGAAU-------CACCAUCACCACUCAUA
...(((.((.(((.((.((--(..(((((.(((....)))((.(----------(.....)).))............--........)))))-------))))).))).))))).. ( -11.60)
>DroYak_CAF1 44534 110 + 1
UUCUGAAGCAGCGCAGAGU--GUCAUUCAAAAAUUCGAACAAAAUGAUGAAUUUAUCAUCCUAGUUACACAUACUCU--GCCAUUCCUGGAUGCAU--ACACAAUCAACACUCAUA
...(((......(((((((--((..(((........)))......(((((.....)))))..........)))))))--))((((....))))...--......)))......... ( -18.30)
>consensus
UUUUGAUGCAGCCUAGAGU__GUCAUUCACAUAUUCGAACAA____________ACAAUACUAGUUACAUUUAGCCU__GCUCCACUUGAGUACAUUUCCACAAUCACCACUCAUC
...............((((............(((((((................................................)))))))................))))... ( -1.30 =  -1.54 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:31 2006