| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,681,522 – 13,681,623 |
| Length | 101 |
| Max. P | 0.998298 |
| Location | 13,681,522 – 13,681,623 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 74.12 |
| Mean single sequence MFE | -31.90 |
| Consensus MFE | -15.33 |
| Energy contribution | -16.06 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.48 |
| SVM decision value | 3.06 |
| SVM RNA-class probability | 0.998298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13681522 101 - 22407834 AAAAUCCAGAUAAAAUGUCUGUUCAUUAUGGCAG--AGUCUACGGAUGGAAGGGGGAAACCAGGCGAAAGGAUAUCUCCCUAGUGCGAGAAGUGGGGAGAGC------A--- ....(((..........((((((......)))))--)(((....))))))...((....))...(....)....((((((((.(......).))))))))..------.--- ( -30.60) >DroSec_CAF1 37772 106 - 1 AAAAUCCAGAUAAAAUGUCUGUUCAUUAUGGCAGAGAGUCUACGGAUGGAAGGGGGAAACCUGGCGAAUGGAUAUCUCUCUAGUGGGAGAAGUGGGCAGAGC------AUGG ..............(((((((((((((...((.....(((....))).....(((....))).)).........((((((....)))))))))))))))).)------)).. ( -31.70) >DroSim_CAF1 35958 106 - 1 AAAAUCCAGAUAAAAUGUCUGUUCAUUAUGGCAGAGAGUCUACGGAUGGAAGGGGGAAACCUGGCGAAUGGAUAUCUCUCUAGUGGGAGAAGUGGGCAGAGC------AUGG ..............(((((((((((((...((.....(((....))).....(((....))).)).........((((((....)))))))))))))))).)------)).. ( -31.70) >DroYak_CAF1 37611 104 - 1 AAAAUCCUGAUAAAAUUUCUGUUCAUUAUGGCAG--AGACUACGGAUGGCAGGGGGAAACCCGACGAGUGAUUAUCUCCCUAGUGGGAGAAGUGGAAGGAGC------AGGG .....((((......((((((((......)))))--)))((((.(((.((..(((....))).....)).))).((((((....)))))).))))......)------))). ( -35.30) >DroAna_CAF1 39244 97 - 1 AAAAAGCAGAUAAAAUGCCUUUUCAUUGUGGGCG--AGUCUAGCAACCGAGAGGGGCGAUCCGAGGCAG----AGCUCG-------GC--GGUGUCCAGGGCAUAAGACUGG ......(((.....(((((((..((((((((((.--.((((.((..((....)).))......))))..----.)))).-------))--))))...)))))))....))). ( -30.20) >consensus AAAAUCCAGAUAAAAUGUCUGUUCAUUAUGGCAG__AGUCUACGGAUGGAAGGGGGAAACCCGGCGAAUGGAUAUCUCCCUAGUGGGAGAAGUGGGCAGAGC______AUGG .................(((.((((((..........(((....))).....(((....)))............((((((....)))))))))))).)))............ (-15.33 = -16.06 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:29 2006