Locus 4793

Sequence ID 2L_DroMel_CAF1
Location 13,674,504 – 13,674,597
Length 93
Max. P 0.999742
window7584

overview

Window 4

Location 13,674,504 – 13,674,597
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 73.20
Mean single sequence MFE -25.60
Consensus MFE -15.05
Energy contribution -15.79
Covariance contribution 0.75
Combinations/Pair 1.18
Mean z-score -2.96
Structure conservation index 0.59
SVM decision value 3.98
SVM RNA-class probability 0.999742
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13674504 93 - 22407834
CUCACACUCACUUACCCACUCAGACUCGAUGCCCCAAAGGCUGCAGCCUUUGAGCAUUUUUAACAUGGCUCAGCCUGUCCGCAUUGGCCACUA
.........................(((((((.....((((((.((((.(((((....)))))...))))))))))....)))))))...... ( -24.50)
>DroPse_CAF1 34341 71 - 1
CUCG--G------------------UCGGUGCUG--UCGCCUCGGGCCCUUUAGAAUUUUUAACAUGGCUCGGCCUGUCUGCAUUGGCCACUA
...(--(------------------(((((((.(--.((..(((((((..(((((...)))))...)))))))..)).).))))))))).... ( -26.70)
>DroSec_CAF1 30820 75 - 1
CUCACAC------------------UCGAUGCCCCAAAGGCUGCAGCCUUUGAGCAUUUUUAACAUGGCUCAGCCUGUCCGCAUUGGCCACUA
.......------------------(((((((.....((((((.((((.(((((....)))))...))))))))))....)))))))...... ( -24.50)
>DroPer_CAF1 34892 71 - 1
CUCG--G------------------UCGGUGCUG--UCGCCUCGGGCCCUUUAGAAUUUUUAACAUGGCUCGGCCUGUCUGCAUUGGCCACUA
...(--(------------------(((((((.(--.((..(((((((..(((((...)))))...)))))))..)).).))))))))).... ( -26.70)
>consensus
CUCA__C__________________UCGAUGCCC__AAGCCUCCAGCCCUUGAGAAUUUUUAACAUGGCUCAGCCUGUCCGCAUUGGCCACUA
.........................(((((((.....((((((.((((..................))))))))))....)))))))...... (-15.05 = -15.79 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:28 2006