| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,674,159 – 13,674,252 |
| Length | 93 |
| Max. P | 0.952866 |
| Location | 13,674,159 – 13,674,252 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 71.32 |
| Mean single sequence MFE | -24.02 |
| Consensus MFE | -8.94 |
| Energy contribution | -9.86 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.37 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.952866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13674159 93 - 22407834 GCCUGUUGUCAAAAUGGAUUUAAUGCCAUAUUUAUUAGAGGUGUAAAUGCAUACACACUAAUGUGU---------GUGUGUGUGUGUGGCGGGGUGCGAG-UG ((((...(((......)))....((((((((((((.......))))((((((((((((....))))---------)))))))))))))))))))).....-.. ( -28.30) >DroPse_CAF1 33951 93 - 1 GCCUGUUGUUAAAAAGGAUUUAAUACCAUAUUUAUUAGAGGUGUAAGUGCAUGCGU------GUGU---GUGCCUGUGCAUGUGUGUGGCAUAAAG-GUGUUG ((((..((((.......(((((.((((.((.....))..)))))))))((((((((------(..(---......)..)))))))))))))...))-)).... ( -23.30) >DroSec_CAF1 30504 71 - 1 GCCUGUUGUCAAAAUGGAUUUAAUGCCAUAUUUAUUAGAGGUGUAAAUGCAUACACACUAAUGUGU---------GUG-----------------------UG ((((.(.((.((.((((........)))).)).)).).)))).......(((((((((....))))---------)))-----------------------)) ( -19.80) >DroYak_CAF1 30377 95 - 1 GCCUGUUGUCAAAAUGGAUUUAAUGCCAUAUUUAUUAGAGGUGUAAAUGCAUACACACUACUGUGGUGUGUG---GUGUGUGUGUGUGGCAAG----GAG-UG ..(((((.....)))))((((..((((((((((((.......))))))(((((((((((((........)))---))))))))))))))))..----)))-). ( -32.40) >DroAna_CAF1 32359 75 - 1 GCCUGUUGUCAGAAAGGAUUUAAUGCCUUAUUUAUUAGAGGUGUAAAUGCAAUCACAU----GUGU---------GUG------UCUGAACUG---------G .((.((..(((((..(.(((((.((((((........))))))))))).)...((((.----...)---------)))------))))))).)---------) ( -17.00) >DroPer_CAF1 34508 93 - 1 GCCUGUUGUUAAAAAGGAUUUAAUACCAUAUUUAUUAGAGGUGUAAGUGCAUGCGU------GUGU---GUGCCUGUGCAUGUGUGUGGCAUAAAG-GUGUUG ((((..((((.......(((((.((((.((.....))..)))))))))((((((((------(..(---......)..)))))))))))))...))-)).... ( -23.30) >consensus GCCUGUUGUCAAAAAGGAUUUAAUGCCAUAUUUAUUAGAGGUGUAAAUGCAUACACAC____GUGU_________GUG__UGUGUGUGGCAUG____G_G_UG ((((.(.((.((.((((........)))).)).)).).))))......((((((((...................)))))))).................... ( -8.94 = -9.86 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:27 2006