Locus 4790

Sequence ID 2L_DroMel_CAF1
Location 13,672,442 – 13,672,547
Length 105
Max. P 0.641491
window7581

overview

Window 1

Location 13,672,442 – 13,672,547
Length 105
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 85.73
Mean single sequence MFE -38.73
Consensus MFE -28.47
Energy contribution -28.83
Covariance contribution 0.36
Combinations/Pair 1.15
Mean z-score -2.68
Structure conservation index 0.73
SVM decision value 0.22
SVM RNA-class probability 0.641491
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13672442 105 - 22407834
ACCCGGCUGCACUUCUUUUGACUCGC---UGUCGAUUGGAGUGCAGU--UGGGCCAACGAGUUGCUCGAGAGUUUCACGGCAAAUGGGCUUGGGUUUUUGGUUUCGGGUU
.((((((((((((((..(((((....---.)))))..))))))))))--))))(((((.((..(((((((.((((......))))...)))))))..)).)))..))... ( -45.30)
>DroSec_CAF1 28789 104 - 1
AC-CGGCUGCACUUCUUUUGACUCGC---UGUCGAUUGGAGUGCAGU--UGGGCCAACGAGUUGCUCGAGAGUUUCACGGCAAAUGGGCUUGGGUUUUUGGUUUUGGGUG
.(-((((((((((((..(((((....---.)))))..))))))))))--)))((((((.((..(((((((.((((......))))...)))))))..)).)))...))). ( -44.10)
>DroSim_CAF1 28687 104 - 1
AC-CGGCUGCACUUCUUUUGACUCGC---UGUCGAUUGGAGUGCAGU--UGGGCCAACGAGUUGCUCGAGAGUUUCACGGCAAAUGGGCUUGGGUUUUUGGUUUUGGGNN
.(-((((((((((((..(((((....---.)))))..))))))))))--))).(((((.((..(((((((.((((......))))...)))))))..)).))..)))... ( -43.60)
>DroEre_CAF1 28498 104 - 1
AC-GGGCUGCACUUCUUUUGACUCGC---UGUCGAUUGGAGUGCAGU--UGGGCCAACGAGUUGCUCGAGAGUUUCACGGCAAAUGGGCUUGGGUUUUUGGUUUUUGGUU
.(-.(((((((((((..(((((....---.)))))..))))))))))--).)((((((.((..(((((((.((((......))))...)))))))..)).))...)))). ( -40.50)
>DroYak_CAF1 28697 98 - 1
AC-GGGCUGCACUUCUUUUGACUCGC---UGUCGAUUGGAGUGCAGU--UGGUCCAACGAGUUCCUCGAGAGUUUCACGGCAAAUGGGCUUGGGUUUUUGGUUU------
((-.(((((((((((..(((((....---.)))))..))))))))))--).))....((((..((.((((.((((......))))...))))))..))))....------ ( -35.60)
>DroAna_CAF1 30942 94 - 1
AU-GGGCUGCACCUCGUUUGACUCGCUGCUGUCGAUUGGAGUGGCGUUUUUGGCUAACGAGUUGCUCGAGAGUUUCAUGGUAAGUGAGUUUUGGC---------------
..-.....(((.((((((.((..(((..((.(.....).))..)))..)).....)))))).)))((((((..(((((.....))))))))))).--------------- ( -23.30)
>consensus
AC_CGGCUGCACUUCUUUUGACUCGC___UGUCGAUUGGAGUGCAGU__UGGGCCAACGAGUUGCUCGAGAGUUUCACGGCAAAUGGGCUUGGGUUUUUGGUUUUGGG__
.....((((((((((..(((((........)))))..))))))))))...(((((......((((.((.(.....).))))))...)))))................... (-28.47 = -28.83 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:25 2006