Locus 479

Sequence ID 2L_DroMel_CAF1
Location 1,394,942 – 1,395,047
Length 105
Max. P 0.765699
window766

overview

Window 6

Location 1,394,942 – 1,395,047
Length 105
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 86.91
Mean single sequence MFE -25.92
Consensus MFE -21.74
Energy contribution -21.34
Covariance contribution -0.40
Combinations/Pair 1.11
Mean z-score -1.63
Structure conservation index 0.84
SVM decision value 0.51
SVM RNA-class probability 0.765699
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1394942 105 + 22407834
--ACCCACCUGACCCUCCGGCUCCCCCUCGCGAUCCUGCUGCUGCUACUACCUGCUACUACCUCAAUAUGCCAAUAAAAGCUUGGUAAUGAUAGCCGGACUCAGGGU
--.....(((((...(((((((.......(((.....((....)).......))).............((((((.......)))))).....))))))).))))).. ( -26.90)
>DroSec_CAF1 13322 95 + 1
--GCCCACCUGACCCUCCGGCUCCCCCCCGCGAUCCUGCUGCUGCUA----------CUACCUCAAUAUGCCAAUAAAAGCUUGGUAAUGAUAGCCGGACUCAGGGU
--.....(((((...(((((((.......(((....)))........----------...........((((((.......)))))).....))))))).))))).. ( -25.70)
>DroSim_CAF1 13506 95 + 1
--ACCCACCUGACCCUCCGGCUCCCCCUCGCGAUCCUGCUGCUGCUA----------CUACCUCAAUAUGCCAAUAAAAGCUUGGUAAUGAUAGCCGGACUCAGGGU
--.....(((((...(((((((.......(((....)))........----------...........((((((.......)))))).....))))))).))))).. ( -25.70)
>DroEre_CAF1 13381 96 + 1
CGACCCACCUG-CCCUCCGGCUCCUCCUCGCGAUCCCGCUGCUGCUGC----------CACCUCAAUAUGCCAAUAAAAGCUUGGUAAUGAUAGCCGGACUCCAGGU
......(((((-...(((((((.......(((....))).((....))----------..........((((((.......)))))).....)))))))...))))) ( -27.10)
>DroYak_CAF1 13310 103 + 1
CUAUCCACCUGACCCUCUGGCUCCAUCUCCCGAUCCCGCUGCUGCUGCA----CCUACUACCUCAAUAUGCCAAUAAAAGCUUGGUAAUGAUAGCCGGACUCCAGGU
......(((((....(((((((..(((..........(.(((....)))----.).............((((((.......))))))..))))))))))...))))) ( -24.20)
>consensus
__ACCCACCUGACCCUCCGGCUCCCCCUCGCGAUCCUGCUGCUGCUAC_________CUACCUCAAUAUGCCAAUAAAAGCUUGGUAAUGAUAGCCGGACUCAGGGU
......((((.....(((((((...............((....)).......................((((((.......)))))).....)))))))....)))) (-21.74 = -21.34 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:07 2006