| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,669,664 – 13,669,775 |
| Length | 111 |
| Max. P | 0.627283 |
| Location | 13,669,664 – 13,669,775 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.53 |
| Mean single sequence MFE | -36.35 |
| Consensus MFE | -27.60 |
| Energy contribution | -28.30 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13669664 111 + 22407834 UCGUCCAUCUGUCCGUGCCAAUACGAGGAGGAGUUGUUGCGCAACAAGAUCAAGAUCAGCCUGCAGCACCGCCACUGCUGCGGCAUCAACUGCAUGGGCUGCUGGCUCUAA--------- ..(.(((.(.((((((((......((....((.(((((....)))))..))....)).(((.((((((.......))))))))).......)))))))).).)))).....--------- ( -36.80) >DroVir_CAF1 34895 110 + 1 UCGUCAAUUUGCCCAUGCCAGUACGAGGAGGAGCUCUUGCGUAACAAAAUCAAAAUCAGUCUGCAACAUCGCCAAUGUUGCGGCAUCAAUUGCAUGGGCUGCUGGCUGUA---------- ..((((....((((((((...(((((((((...))))).))))...............(.(((((((((.....)))))))))).......))))))))...))))....---------- ( -37.70) >DroGri_CAF1 40417 111 + 1 UCCUCCAUUUGCCCGUGCCAGUAUGAGGAGGAGCUGUUUCGUAACAAAAUCAAAGUCAGCCUGCAACAUCGCCAAUGCUGUGGCAUCAAUUGCAUGGGCUGUUGGCUAUAG--------- ....(((...(((((((((((..(((....((..((((....))))...))....)))..))).......((((......)))).......))))))))...)))......--------- ( -31.80) >DroWil_CAF1 97414 119 + 1 UCCUCGAUUUGCCCAUGCCAAUAUGAGGAGGAGUUGUUGCGCAACAAAAUAAAGAUCAGCCUCCAGCAUCGUCAAUGCUGCGGCAUCAAUUGCAUGGGCUGUUGGCUAUGAAAACCACA- ...(((((..((((((((.(((.(((......((((.....)))).............(((..((((((.....)))))).))).)))))))))))))).)))))..............- ( -36.10) >DroAna_CAF1 28299 111 + 1 UCAUCCAUCUGCCCCUGUCAGUACGAGGAGGAGCUGCUCCGCAACAAGAUCAAGAUCAGCCUGCAGCAUCGCACAUGCUGUGGCAUCAACUGCAUGGGCUGCUGGCUAUGA--------- (((((((.(.((((.((.((((..(.((((......)))).).....(((....))).(((.(((((((.....))))))))))....)))))).)))).).)))..))))--------- ( -39.10) >DroPer_CAF1 29746 119 + 1 UCGUCCAUCUGCCCCUGUCAGUAUGAGGAGGAAUUGCUGCGCAAUAAAAUCAAAAUUAGCCUGCAGCAUCGCCAAUGCUGUGGCAUCAACUGCAUGGGCUGCUGGCUCUGAA-ACCACAG ..(.(((.(.((((.((.((((.(((.((...(((((...)))))....)).......(((.(((((((.....)))))))))).))))))))).)))).).))))......-....... ( -36.60) >consensus UCGUCCAUCUGCCCAUGCCAGUACGAGGAGGAGCUGUUGCGCAACAAAAUCAAAAUCAGCCUGCAGCAUCGCCAAUGCUGCGGCAUCAACUGCAUGGGCUGCUGGCUAUAA_________ ....(((...(((((((.((((..((....((..((((....))))...))....)).(((.(((((((.....))))))))))....)))))))))))...)))............... (-27.60 = -28.30 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:24 2006