Locus 4787

Sequence ID 2L_DroMel_CAF1
Location 13,661,306 – 13,661,408
Length 102
Max. P 0.741893
window7578

overview

Window 8

Location 13,661,306 – 13,661,408
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.50
Mean single sequence MFE -29.36
Consensus MFE -16.77
Energy contribution -17.08
Covariance contribution 0.31
Combinations/Pair 1.29
Mean z-score -2.14
Structure conservation index 0.57
SVM decision value 0.45
SVM RNA-class probability 0.741893
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13661306 102 + 22407834
CUUCACACUUUGCUAGAGAAUUCUCUAGGUGAAUUGGAGCGU--------UUUCCACUUGUACCUAUGUCAAAUAU--------GGUUACUUGGCGGUCAAACUCUUUGGCGAA--UACA
........(((((((((((......((((((...(((((...--------.)))))....))))))((((((.((.--------...)).)))))).......)))))))))))--.... ( -26.70)
>DroSec_CAF1 17777 101 + 1
CUUCACACUUUGCUAGAAAAUUCUCUAGGUGAAUUGGAGCGU--------UUUCCACUUGUACCUAUGUCAAAUAU--------GGGUACUUGGCGGUCAAAC-CUUUGGCGAA--UACA
.(((......(((((((((((.((((((.....)))))).))--------)))).....((((((((((...))))--------)))))).)))))(((((..-..))))))))--.... ( -29.10)
>DroSim_CAF1 17531 101 + 1
CUUCACACUUUGCUAGAAAAUUCUCUAGGUGAAUUGGAGCGU--------UUUCCACUUGUACCUAUGUCAAAUAU--------GGGUACUUGGCGGUCAACC-CUUUGGCGCA--UACA
............(((((......)))))(((..(..(((.((--------(..((.((.((((((((((...))))--------))))))..)).))..))).-)))..)..))--)... ( -29.10)
>DroEre_CAF1 17133 101 + 1
CUUCACACUUUGCCAAAGGAUUCUCUAGGUGAAUUGGACCGU--------UUUCCACUUGCACCUCUGUCAAAUAU--------GGGUACUUGGCGGUCAACC-CUUUGGCAAC--UACA
.........((((((((((.......(((((((.((((....--------..)))).)).)))))(((((((.((.--------...)).))))))).....)-))))))))).--.... ( -31.70)
>DroYak_CAF1 17245 103 + 1
CUUCAGACUUUGCUAAAGGAUUCUCUAGGUGAAUUGGGCCGU--------UUUCCACUUGUACCUCUGUCAAAUAU--------GGGUACUUGGCGGUCAACC-CUUUGGCGAAUAUACA
........(((((((((((((((.......))))..(((((.--------...(((...((((((.(((...))).--------)))))).))))))))...)-))))))))))...... ( -30.90)
>DroAna_CAF1 19833 116 + 1
CUUAACACUUUCGCCGAGUGCCAUUCAGGGGA-GUGUACCAUACAUAUUGUGUCCACUUGUACCUCUGUCAAAUAUUCAAAUACAUGUGCUUGGCGGUCAGCU-CGUUGCCAAA--GACA
...........(((((((..(....(((((((-(((.((((.......)).)).))))....))))))..................)..)))))))(((.((.-....))....--))). ( -28.65)
>consensus
CUUCACACUUUGCUAGAGAAUUCUCUAGGUGAAUUGGACCGU________UUUCCACUUGUACCUAUGUCAAAUAU________GGGUACUUGGCGGUCAACC_CUUUGGCGAA__UACA
.........(((((((((........(((((...(((((............)))))....))))).((((((.(((..........))).))))))........)))))))))....... (-16.77 = -17.08 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:22 2006