Locus 4785

Sequence ID 2L_DroMel_CAF1
Location 13,660,237 – 13,660,353
Length 116
Max. P 0.548650
window7576

overview

Window 6

Location 13,660,237 – 13,660,353
Length 116
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 88.84
Mean single sequence MFE -19.15
Consensus MFE -13.41
Energy contribution -15.47
Covariance contribution 2.06
Combinations/Pair 1.04
Mean z-score -1.63
Structure conservation index 0.70
SVM decision value 0.03
SVM RNA-class probability 0.548650
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13660237 116 - 22407834
AAAA-AAAAGUAAACACAGUCUGAAAGUAGCCAACUAAACUUUUAUUAAAAUUGUAAAUAUUUAUCAACAUUCAUAAACCAGAGCUACCACAGCAAAUGUGGUUGUAUGCUGCUGCA
....-.....................(((((....((((..(((((.......)))))..))))..................(((.((((((.....)))))).....)))))))). ( -18.60)
>DroSec_CAF1 16664 117 - 1
AAAAAAAAAGUAAACACAGUCUGAAAGUAGCCAACUAAACUUUUAUUAAAAUUGUAAAUAUUUAUCAACAUUCAUAAACCAGAGCUACCGCAGCAAAUGUGGUUGUGUGGUGCUGCA
..........................(((((....((((..(((((.......)))))..)))).............((((..((.((((((.....)))))).)).))))))))). ( -22.60)
>DroEre_CAF1 15958 114 - 1
ACAAAAA---AAAUCACAGUCUGAAAGUAGCCAACUAAACUUUUAUUAAAAUUGUAAAUAUUUAUCAACAUUCAUAAACCACGGCUACCACAGGAAAUGUGGCUGUAUGGUGCUGCA
.......---................(((((....((((..(((((.......)))))..)))).............((((..((..(((((.....)))))..)).))))))))). ( -20.80)
>DroYak_CAF1 16251 105 - 1
AAAAA-A---UAAACACAGUCUGAAAGUAGCCAACUAAACUUUUAUUAAAAUUGUAAAUAUUUAUCAACAUUCAUAAACCACGGCUACCACACAAAAUGUGGUUGUAUG--------
.....-(---(((.((((...((...((((((.........(((((.......)))))..(((((........)))))....))))))....))...)))).))))...-------- ( -14.60)
>consensus
AAAAAAA___UAAACACAGUCUGAAAGUAGCCAACUAAACUUUUAUUAAAAUUGUAAAUAUUUAUCAACAUUCAUAAACCACAGCUACCACAGCAAAUGUGGUUGUAUGGUGCUGCA
..........................(((((....((((..(((((.......)))))..)))).............((((..((.((((((.....)))))).)).))))))))). (-13.41 = -15.47 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:20 2006