| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,659,513 – 13,659,612 |
| Length | 99 |
| Max. P | 0.547366 |
| Location | 13,659,513 – 13,659,612 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 93.59 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -20.44 |
| Energy contribution | -20.25 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13659513 99 + 22407834 AGAGUGUAGCAUACAUUUUCGCGUUGGGCUUUUGUGUGCAGCUGCUUCCAGGGCAUUUUUUUUUUGUUUUUUCGUUUUGCAUUCGAAAUUAAUGCACAU .((((((((((((((.....((.....))...)))))))...((((.....))))......................)))))))............... ( -20.80) >DroSec_CAF1 15955 94 + 1 AGAGUGUAGCAUACAUUUUCGCGUUGGGCUUUUGUGUGCAGCUGCUUCCAGGGCAUUUUUUUU-----UUUUCGUUUUGCAUUCGAAAUUAAUGCACAU .((((((((((((((.....((.....))...)))))))...((((.....))))........-----.........)))))))............... ( -20.80) >DroEre_CAF1 15202 92 + 1 AGAGUGUAGCAUACAUUUUCGCGCUGGGCUUUUGUGUGCAGCUGCUUCCAGGGCAUUUUUG-------UUUUCGUUUUGCAUUCGAAAUUAAUGCACAU ...((((.((((....(((((.((((.((......)).))))(((..(.((((((....))-------)))).)....)))..)))))...)))))))) ( -23.40) >DroYak_CAF1 15506 90 + 1 AGAGUGUUGCAUACAUUUUCGCGUUGGGCUUUUGUGUGCAGCUGCUUCCAGGGCAUUUU---------UUUUCGUUUUGCAUUCGAAAUUAAUGCACAU .((((((((((((((.....((.....))...)))))))))).)))).....(((((..---------.(((((.........)))))..))))).... ( -25.50) >consensus AGAGUGUAGCAUACAUUUUCGCGUUGGGCUUUUGUGUGCAGCUGCUUCCAGGGCAUUUUUU_______UUUUCGUUUUGCAUUCGAAAUUAAUGCACAU ...((((.((((........((.((((((..(((....)))..))..)))).))...............(((((.........)))))...)))))))) (-20.44 = -20.25 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:19 2006