| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,659,029 – 13,659,129 |
| Length | 100 |
| Max. P | 0.687288 |
| Location | 13,659,029 – 13,659,129 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 87.12 |
| Mean single sequence MFE | -28.32 |
| Consensus MFE | -23.02 |
| Energy contribution | -23.58 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.687288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13659029 100 + 22407834 CAGCCGUGCCACGAUUUCGCGUUUGUUGUGCAGCU-GCUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAUAAACGGCAAGCCAGCGAACACACACACAC .....(((.......((((((((((((((...(((-((((.(..(.....)..).))))).))....)))))))))((....)).)))))......))).. ( -29.82) >DroSec_CAF1 15506 95 + 1 CAGCCGUGCCACGAUUUCGCGUUUGUUGUGCAGCU-GCUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAUAAACGGCAAGCCAGCGAACACACA----- .....(((.......((((((((((((((...(((-((((.(..(.....)..).))))).))....)))))))))((....)).))))))))...----- ( -28.71) >DroYak_CAF1 15043 93 + 1 CAGCCGUGCCACGAUUUCGCGUUUGUUGUGCAGCU-GCUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAUAAACGGCAAGCCAGCGCACACA------- .....((((...(....)(((((((((((...(((-((((.(..(.....)..).))))).))....)))))))))((....)).))))))...------- ( -28.50) >DroAna_CAF1 16506 101 + 1 UAACAGAGAUCCGAUUUCGCGUUUGUUGUGCAACUGGCUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAAAACCGGCAAGCUACCUUGCACACACAAAC .....(((((...)))))..(((((((((((((((.(((((..........((((.....))))..........))))).)).....))))))).)))))) ( -26.25) >consensus CAGCCGUGCCACGAUUUCGCGUUUGUUGUGCAGCU_GCUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAUAAACGGCAAGCCAGCGAACACACA_____ ..(((((......((((.(((..(((((((((((...............))))))))))))))..)))).....)))))...................... (-23.02 = -23.58 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:18 2006